Co-expression analysis

Gene ID Zm.10062.1.A1_at
Gene name hypothetical protein LOC100280233
Homology with ArabidopsisSimilar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4)
Module size 6 genes
NF 0.16
%ile 11.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.40.91Zm.10062.1.A1_atBM378648hypothetical protein LOC100280233-4e-4At5g16000NIK1 (NSP-INTERACTING KINASE 1)O.I.H.G.S.X.
0.3641.30.93Zm.6295.1.A1_atAY107687.1NADH-ubiquinone oxidoreductase B18 subunit-2e+0At3g55670-O.I.H.G.S.X.
0.1811.60.93Zm.2862.2.A1_a_atAY112482.1calnexin-2e-44At5g07340calnexin, putativeO.I.H.G.S.X.
0.1710.60.93Zm.7932.1.A1_atBM378311hypothetical protein LOC100278269-2e-2At5g20165unknown proteinO.I.H.G.S.X.
0.083.40.92Zm.3236.1.S1_atBG837635hypothetical protein LOC100279928-3e-1At5g03350legume lectin family proteinO.I.H.G.S.X.
0.072.90.93Zm.5515.1.A1_atCF631927--3e+0At2g01580unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5571.60.91Zm.17615.1.A1_atCK347383protein binding protein-2e+0At2g20620unknown proteinO.I.H.G.S.X.
0.4352.80.90Zm.3101.1.S1_atAW424475hypothetical protein LOC100278550-1e+0At2g07521unknown proteinO.I.H.G.S.X.
0.4251.30.85Zm.17272.1.S1_atCK371238--8e-6At2g41190amino acid transporter family proteinO.I.H.G.S.X.
0.4048.50.93Zm.5152.1.A1_atAY105529.1hypothetical protein LOC100275689-2e+0At3g53460CP29O.I.H.G.S.X.
0.3641.30.86Zm.12177.1.A1_atBM380114hypothetical protein LOC100193797-3e-1At2g05752unknown proteinO.I.H.G.S.X.
0.3131.60.89Zm.8037.1.A1_atBM073083--1e+0At5g58580ATL63 (ARABIDOPSIS TÓO.I.H.G.S.X.
0.2318.60.86Zm.4265.1.A1_atCA402796--2e+0At1g12710AtPP2-A12 (Phloem protein 2-A12)O.I.H.G.S.X.
0.1811.60.88Zm.16182.1.A1_atCF244004nucleoporin p58/p45-2e-3At4g37130hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1710.60.84Zm.8348.1.A1_atBM073795Hypothetical protein LOC100193915-3e-1At3g20750zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.169.40.88Zm.13739.1.S1_atAY106154.1hypothetical protein LOC100273644-3e+0At5g15390tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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