Co-expression analysis

Gene ID Zm.10062.1.A1_at
Gene name hypothetical protein LOC100280233
Homology with ArabidopsisSimilar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4)
Module size 6 genes
NF 0.16
%ile 11.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.40.91Zm.10062.1.A1_atBM378648hypothetical protein LOC100280233-4e-4At5g16000NIK1 (NSP-INTERACTING KINASE 1)O.I.H.G.S.X.
0.3641.30.93Zm.6295.1.A1_atAY107687.1NADH-ubiquinone oxidoreductase B18 subunit-2e+0At3g55670-O.I.H.G.S.X.
0.1811.60.93Zm.2862.2.A1_a_atAY112482.1calnexin-2e-44At5g07340calnexin, putativeO.I.H.G.S.X.
0.1710.60.93Zm.7932.1.A1_atBM378311hypothetical protein LOC100278269-2e-2At5g20165unknown proteinO.I.H.G.S.X.
0.083.40.92Zm.3236.1.S1_atBG837635hypothetical protein LOC100279928-3e-1At5g03350legume lectin family proteinO.I.H.G.S.X.
0.072.90.93Zm.5515.1.A1_atCF631927--3e+0At2g01580unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1609302_at, orthologous to the query gene, Zm.10062.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.91609302_atAt5g16000similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.7491.01613351_atAt5g16000hypothetical protein LOC100252023-2e-1At5g12970C2 domain-containing proteinO.I.H.G.S.X.
0.5577.31606662_atAt5g16000similar to somatic embryogenesis receptor kinase-6e-59At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.4868.81611382_atAt5g16000hypothetical protein LOC100264955-2e-6At3g53850-O.I.H.G.S.X.
0.4564.61614917_atAt5g16000hypothetical protein LOC100267340-4e+0At5g60660PIP2O.I.H.G.S.X.
0.4464.11622185_atAt5g16000--3e-2At1g78915bindingO.I.H.G.S.X.
0.4260.11618126_atAt5g16000hypothetical protein LOC100261549-3e-8At1g76660-O.I.H.G.S.X.
0.4057.71619974_atAt5g16000hypothetical protein LOC100250685-1e-3At5g17690TFL2 (TERMINAL FLOWER 2)O.I.H.G.S.X.
0.3954.91620990_atAt5g16000hypothetical protein LOC100247103-1e-18At1g19330unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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