Co-expression analysis

Gene ID	Zm.10062.1.A1_at
Gene name	hypothetical protein LOC100280233
Homology with Arabidopsis	Similar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4)
Module size	6 genes
NF	0.16
%ile	11.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.91	Zm.10062.1.A1_at	BM378648	hypothetical protein LOC100280233	-	4e-4	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.93	Zm.6295.1.A1_at	AY107687.1	NADH-ubiquinone oxidoreductase B18 subunit	-	2e+0	At3g55670	-	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.93	Zm.2862.2.A1_a_at	AY112482.1	calnexin	-	2e-44	At5g07340	calnexin, putative	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.93	Zm.7932.1.A1_at	BM378311	hypothetical protein LOC100278269	-	2e-2	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.92	Zm.3236.1.S1_at	BG837635	hypothetical protein LOC100279928	-	3e-1	At5g03350	legume lectin family protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.93	Zm.5515.1.A1_at	CF631927	-	-	3e+0	At2g01580	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5488.1.A1_at, orthologous to the query gene, Zm.10062.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.5488.1.A1_at	At5g16000	-	-	2e-3	At4g30520	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.5488.2.S1_at	At5g16000	-	-	7e-4	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.9825.1.S1_at	At5g16000	-	-	5e-3	At3g08740	elongation factor P (EF-P) family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.25386.1.S1_at	At5g16000	-	-	7e+0	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.06	7.6	TaAffx.37219.1.S1_at	At5g16000	-	-	6e-1	At3g08740	elongation factor P (EF-P) family protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.10282.1.A1_at	At5g16000	-	-	3e-6	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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