CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10062.1.A1_at

Gene name hypothetical protein LOC100280233
Homology with Arabidopsis Similar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4)

Module size 6 genes

NF 0.16

%ile 11.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 0.91 Zm.10062.1.A1_at BM378648 hypothetical protein LOC100280233 - 4e-4 At5g16000 NIK1 (NSP-INTERACTING KINASE 1) O.I. H.G. S.X.
0.36 41.3 0.93 Zm.6295.1.A1_at AY107687.1 NADH-ubiquinone oxidoreductase B18 subunit - 2e+0 At3g55670 - O.I. H.G. S.X.
0.18 11.6 0.93 Zm.2862.2.A1_a_at AY112482.1 calnexin - 2e-44 At5g07340 calnexin, putative O.I. H.G. S.X.
0.17 10.6 0.93 Zm.7932.1.A1_at BM378311 hypothetical protein LOC100278269 - 2e-2 At5g20165 unknown protein O.I. H.G. S.X.
0.08 3.4 0.92 Zm.3236.1.S1_at BG837635 hypothetical protein LOC100279928 - 3e-1 At5g03350 legume lectin family protein O.I. H.G. S.X.
0.07 2.9 0.93 Zm.5515.1.A1_at CF631927 - - 3e+0 At2g01580 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.56	74.4	0.91	Zm.10062.1.A1_at	BM378648	hypothetical protein LOC100280233	-	4e-4	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	O.I.	H.G.	S.X.
0.36	41.3	0.93	Zm.6295.1.A1_at	AY107687.1	NADH-ubiquinone oxidoreductase B18 subunit	-	2e+0	At3g55670	-	O.I.	H.G.	S.X.
0.18	11.6	0.93	Zm.2862.2.A1_a_at	AY112482.1	calnexin	-	2e-44	At5g07340	calnexin, putative	O.I.	H.G.	S.X.
0.17	10.6	0.93	Zm.7932.1.A1_at	BM378311	hypothetical protein LOC100278269	-	2e-2	At5g20165	unknown protein	O.I.	H.G.	S.X.
0.08	3.4	0.92	Zm.3236.1.S1_at	BG837635	hypothetical protein LOC100279928	-	3e-1	At5g03350	legume lectin family protein	O.I.	H.G.	S.X.
0.07	2.9	0.93	Zm.5515.1.A1_at	CF631927	-	-	3e+0	At2g01580	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.2 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5 98.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM320471 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
13.2	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os02g0728500, orthologous to the query gene, Zm.10062.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 Os02g0728500 At5g16000 - Receptor protein kinase-like protein 6e-9 At4g30520 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.55 73.7 Os08g0565700 At5g16000 - SRA-YDG domain containing protein 4e-6 At2g33290 SUVH2 (SU(VAR)3-9 HOMOLOG 2) O.I. H.G. S.X.
0.47 62.3 Os02g0450000 At5g16000 - Conserved hypothetical protein 1e-1 At2g36710 pectinesterase family protein O.I. H.G. S.X.
0.45 58.8 Os03g0802900 At5g16000 - MYC1 8e-25 At1g59640 ZCW32 O.I. H.G. S.X.
0.43 55.4 Os01g0259400 At5g16000 - Protein kinase domain containing protein 3e-15 At5g18700 EMB3013 (embryo defective 3013) O.I. H.G. S.X.
0.43 55.4 Os09g0565500 At5g16000 - Invasin/intimin cell-adhesion domain containingprotein 1e+0 At5g17550 PEX19-2 O.I. H.G. S.X.
0.40 51.1 Os07g0508500 At5g16000 - Protein kinase domain containing protein 3e+0 At3g45240 GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) O.I. H.G. S.X.
0.36 44.0 Os10g0571300 At5g16000 - Protein kinase-like protein 2e-39 At5g46570 BSK2 (BR-SIGNALING KINASE 2) O.I. H.G. S.X.
0.36 44.0 Os07g0638000 At5g16000 - Hypothetical protein 2e-1 At3g58370 K-Cl Co-transporter type 1 protein-related / KCC1 protein-related O.I. H.G. S.X.
0.32 36.3 Os09g0383300 At5g16000 - Mitogen-activated protein kinase kinase kinase 1(EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase1). Splice isoform 1S 1e-12 At1g54960 ANP2 O.I. H.G. S.X.
0.32 36.3 Os02g0139300 At5g16000 - Glycoside hydrolase, family 17 protein 4e-4 At4g31140 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.32 36.3 Os12g0502300 At5g16000 - Cyclin A2 4e-3 At5g25380 CYCA2 O.I. H.G. S.X.
0.32 36.3 Os08g0558400 At5g16000 - Kinesin heavy chain (Fragment) 1e-35 At2g36200 kinesin motor protein-related O.I. H.G. S.X.
0.31 34.5 Os04g0599700 At5g16000 - Cobalamin synthesis protein/P47K domain containingprotein 8e-7 At1g80480 PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) O.I. H.G. S.X.
0.31 34.5 Os07g0208900 At5g16000 - Major facilitator superfamily protein 3e-7 At4g36790 transporter-related O.I. H.G. S.X.
0.30 32.7 Os03g0577100 At5g16000 - Nuf2 family protein 4e+0 At2g27510 ATFD3 (ferredoxin 3) O.I. H.G. S.X.
0.30 32.7 Os01g0868300 At5g16000 - - 2e-9 At5g67100 ICU2 (INCURVATA2) O.I. H.G. S.X.
0.26 25.6 Os04g0117200 At5g16000 - Spectrin repeat containing protein 9e-1 At1g03130 PSAD-2 (photosystem I subunit D-2) O.I. H.G. S.X.
0.25 24.1 Os12g0565300 At5g16000 - Calmodulin-binding protein MPCBP 2e-14 At2g43040 NPG1 (no pollen germination 1) O.I. H.G. S.X.
0.24 22.4 Os07g0105700 At5g16000 - Carboxy-terminal kinesin 2 (XCTK2) 9e-8 At4g05190 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) O.I. H.G. S.X.
0.23 21.2 Os04g0681600 At5g16000 - Protein of unknown function DUF580 family protein 4e-25 At3g15380 choline transporter-related O.I. H.G. S.X.
0.23 21.2 Os09g0320400 At5g16000 - Xanthine/uracil/vitamin C permease family protein 4e+0 At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.23 21.2 Os08g0107900 At5g16000 - Mago nashi-like protein 2e-18 At1g02140 MAGO (MAGO NASHI) O.I. H.G. S.X.
0.19 15.1 Os10g0533000 At5g16000 - D-isomer specific 2-hydroxyacid dehydrogenase,NAD-binding domain containing protein 2e-43 At1g01510 AN (ANGUSTIFOLIA) O.I. H.G. S.X.
0.17 12.6 Os10g0154600 At5g16000 - Hypothetical protein 1e+0 At4g36530 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.13 8.2 Os01g0280400 At5g16000 - DNA-binding protein 1e+0 At2g35640 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.75	91.9	Os02g0728500	At5g16000	-	Receptor protein kinase-like protein	6e-9	At4g30520	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.55	73.7	Os08g0565700	At5g16000	-	SRA-YDG domain containing protein	4e-6	At2g33290	SUVH2 (SU(VAR)3-9 HOMOLOG 2)	O.I.	H.G.	S.X.
0.47	62.3	Os02g0450000	At5g16000	-	Conserved hypothetical protein	1e-1	At2g36710	pectinesterase family protein	O.I.	H.G.	S.X.
0.45	58.8	Os03g0802900	At5g16000	-	MYC1	8e-25	At1g59640	ZCW32	O.I.	H.G.	S.X.
0.43	55.4	Os01g0259400	At5g16000	-	Protein kinase domain containing protein	3e-15	At5g18700	EMB3013 (embryo defective 3013)	O.I.	H.G.	S.X.
0.43	55.4	Os09g0565500	At5g16000	-	Invasin/intimin cell-adhesion domain containingprotein	1e+0	At5g17550	PEX19-2	O.I.	H.G.	S.X.
0.40	51.1	Os07g0508500	At5g16000	-	Protein kinase domain containing protein	3e+0	At3g45240	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1)	O.I.	H.G.	S.X.
0.36	44.0	Os10g0571300	At5g16000	-	Protein kinase-like protein	2e-39	At5g46570	BSK2 (BR-SIGNALING KINASE 2)	O.I.	H.G.	S.X.
0.36	44.0	Os07g0638000	At5g16000	-	Hypothetical protein	2e-1	At3g58370	K-Cl Co-transporter type 1 protein-related / KCC1 protein-related	O.I.	H.G.	S.X.
0.32	36.3	Os09g0383300	At5g16000	-	Mitogen-activated protein kinase kinase kinase 1(EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase1). Splice isoform 1S	1e-12	At1g54960	ANP2	O.I.	H.G.	S.X.
0.32	36.3	Os02g0139300	At5g16000	-	Glycoside hydrolase, family 17 protein	4e-4	At4g31140	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.
0.32	36.3	Os12g0502300	At5g16000	-	Cyclin A2	4e-3	At5g25380	CYCA2	O.I.	H.G.	S.X.
0.32	36.3	Os08g0558400	At5g16000	-	Kinesin heavy chain (Fragment)	1e-35	At2g36200	kinesin motor protein-related	O.I.	H.G.	S.X.
0.31	34.5	Os04g0599700	At5g16000	-	Cobalamin synthesis protein/P47K domain containingprotein	8e-7	At1g80480	PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17)	O.I.	H.G.	S.X.
0.31	34.5	Os07g0208900	At5g16000	-	Major facilitator superfamily protein	3e-7	At4g36790	transporter-related	O.I.	H.G.	S.X.
0.30	32.7	Os03g0577100	At5g16000	-	Nuf2 family protein	4e+0	At2g27510	ATFD3 (ferredoxin 3)	O.I.	H.G.	S.X.
0.30	32.7	Os01g0868300	At5g16000	-	-	2e-9	At5g67100	ICU2 (INCURVATA2)	O.I.	H.G.	S.X.
0.26	25.6	Os04g0117200	At5g16000	-	Spectrin repeat containing protein	9e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.
0.25	24.1	Os12g0565300	At5g16000	-	Calmodulin-binding protein MPCBP	2e-14	At2g43040	NPG1 (no pollen germination 1)	O.I.	H.G.	S.X.
0.24	22.4	Os07g0105700	At5g16000	-	Carboxy-terminal kinesin 2 (XCTK2)	9e-8	At4g05190	ATK5 (ARABIDOPSIS THALIANA KINESIN 5)	O.I.	H.G.	S.X.
0.23	21.2	Os04g0681600	At5g16000	-	Protein of unknown function DUF580 family protein	4e-25	At3g15380	choline transporter-related	O.I.	H.G.	S.X.
0.23	21.2	Os09g0320400	At5g16000	-	Xanthine/uracil/vitamin C permease family protein	4e+0	At3g43720	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.23	21.2	Os08g0107900	At5g16000	-	Mago nashi-like protein	2e-18	At1g02140	MAGO (MAGO NASHI)	O.I.	H.G.	S.X.
0.19	15.1	Os10g0533000	At5g16000	-	D-isomer specific 2-hydroxyacid dehydrogenase,NAD-binding domain containing protein	2e-43	At1g01510	AN (ANGUSTIFOLIA)	O.I.	H.G.	S.X.
0.17	12.6	Os10g0154600	At5g16000	-	Hypothetical protein	1e+0	At4g36530	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.13	8.2	Os01g0280400	At5g16000	-	DNA-binding protein	1e+0	At2g35640	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Zm.10062.1.A1_at
Gene name	hypothetical protein LOC100280233
Homology with Arabidopsis	Similar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4)
Module size	6 genes
NF	0.16
%ile	11.0

Co-expression analysis

Gene ID Zm.10062.1.A1_at Gene name hypothetical protein LOC100280233 Homology with ArabidopsisSimilar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4) Module size 6 genes NF 0.16 %ile 11.0

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.10062.1.A1_at

Gene name hypothetical protein LOC100280233
Homology with Arabidopsis Similar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4)

Module size 6 genes

NF 0.16

%ile 11.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera