Co-expression analysis

Gene ID Zm.10062.1.A1_at
Gene name hypothetical protein LOC100280233
Homology with ArabidopsisSimilar to At5g16000: NIK1 (NSP-INTERACTING KINASE 1) (HF=4e-4)
Module size 6 genes
NF 0.16
%ile 11.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.40.91Zm.10062.1.A1_atBM378648hypothetical protein LOC100280233-4e-4At5g16000NIK1 (NSP-INTERACTING KINASE 1)O.I.H.G.S.X.
0.3641.30.93Zm.6295.1.A1_atAY107687.1NADH-ubiquinone oxidoreductase B18 subunit-2e+0At3g55670-O.I.H.G.S.X.
0.1811.60.93Zm.2862.2.A1_a_atAY112482.1calnexin-2e-44At5g07340calnexin, putativeO.I.H.G.S.X.
0.1710.60.93Zm.7932.1.A1_atBM378311hypothetical protein LOC100278269-2e-2At5g20165unknown proteinO.I.H.G.S.X.
0.083.40.92Zm.3236.1.S1_atBG837635hypothetical protein LOC100279928-3e-1At5g03350legume lectin family proteinO.I.H.G.S.X.
0.072.90.93Zm.5515.1.A1_atCF631927--3e+0At2g01580unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1808.1.S1_at, orthologous to the query gene, Zm.10062.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8993.5Gma.1808.1.S1_atAt5g16000--4e-54At1g60800NIK3 (NSP-INTERACTING KINASE 3)O.I.H.G.S.X.
0.3954.5Gma.7341.1.A1_s_atAt5g16000--3e-29At2g22670IAA8O.I.H.G.S.X.
0.2228.1GmaAffx.41905.1.S1_atAt5g16000--2e+0At4g16410unknown proteinO.I.H.G.S.X.
0.2126.6Gma.4597.1.S1_atAt5g16000--6e-11At4g21760BGLU47 (Beta-glucosidase 47)O.I.H.G.S.X.
0.2025.1Gma.5389.1.S1_atAt5g16000--2e-4At1g72160SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.1923.7Gma.13221.1.A1_atAt5g16000--6e+0At5g52140protein binding / zinc ion bindingO.I.H.G.S.X.
0.1822.3Gma.6789.1.S1_atAt5g16000--4e-7At1g68920basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.1721.2Gma.13220.1.A1_atAt5g16000--1e-12At5g23550-O.I.H.G.S.X.
0.1619.7GmaAffx.88740.1.S1_s_atAt5g16000--2e-9At1g26355SP1L1 (SPIRAL1-LIKE1)O.I.H.G.S.X.
0.1518.7GmaAffx.85865.1.S1_atAt5g16000--2e-16At3g27580ATPK7O.I.H.G.S.X.
0.1215.1Gma.5674.1.S1_a_atAt5g16000--4e-36At3g58610ketol-acid reductoisomeraseO.I.H.G.S.X.
0.1215.1Gma.5932.1.S1_atAt5g16000--5e-10At5g48385-O.I.H.G.S.X.
0.0710.2Gma.3534.1.S1_x_atAt5g16000--7e-16At1g48550vacuolar protein sorting-associated protein 26 family protein / VPS26 family proteinO.I.H.G.S.X.
0.0710.2Gma.5192.1.S1_atAt5g16000--1e-14At3g49350RAB GTPase activatorO.I.H.G.S.X.
0.047.0GmaAffx.8636.1.S1_atAt5g16000--6e+0At5g37475translation initiation factor-relatedO.I.H.G.S.X.
0.035.8Gma.8234.1.S1_atAt5g16000--1e-24At1g65000unknown proteinO.I.H.G.S.X.
0.035.8Gma.10878.1.S1_atAt5g16000--3e+0At5g13430ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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