Co-expression analysis

Gene ID	Zm.10055.1.A1_at
Gene name	hypothetical protein LOC100192882
Homology with Arabidopsis	Similar to At2g01300: unknown protein (HF=2e+0)
Module size	39 genes
NF	0.27
%ile	22.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.92	Zm.10055.1.A1_at	BM378738	hypothetical protein LOC100192882	-	2e+0	At2g01300	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.11650.1.A1_at	BM379683	hypothetical protein LOC100192105	-	4e+0	At2g12405	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.13055.1.S1_at	CF637576	-	-	2e-14	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.19135.1.A1_at	CO526574	-	-	2e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.18208.1.A1_at	BM338077	-	-	4e+0	At3g45245	-	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.13712.1.S1_at	AY106534.1	-	-	4e+0	At2g46640	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.16687.1.S1_at	CF636696	hypothetical protein LOC100194066	-	3e-3	At5g07250	ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.4664.3.A1_a_at	AY108266.1	fatty acid elongase	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.1940.1.S1_at	AW507032	-	-	5e-1	At4g13615	four F5 protein-related / 4F5 protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.12930.1.S1_at	CA403471	hypothetical protein LOC100191377	-	3e-3	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.94	Zm.3828.1.A1_at	AY105560.1	hypothetical protein LOC100191702	-	2e+0	At4g03540	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.94	Zm.4602.1.A1_at	AI737296	-	-	1e-1	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.3735.1.A1_at	AY107167.1	hypothetical protein LOC100277155	-	5e-8	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.2602.1.S1_at	AY109922.1	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.11667.1.A1_at	CF633574	hypothetical protein LOC100274234	-	4e-1	At4g39630	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.11441.1.S1_at	AY672654.1	ethylene-responsive factor-like protein 1	-	2e+0	At3g14230	RAP2.2	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.96	Zm.7704.1.A1_at	BM079575	hypothetical protein LOC100278612	-	5e-3	At1g62240	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.8576.1.A1_at	BM074724	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.4401.1.A1_at	AY108702.1	YGL010w-like protein	-	9e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.4727.1.S1_at	AI738206	hypothetical protein LOC100273187	-	5e+0	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.15421.1.S1_at	AY107122.1	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.2150.1.A1_a_at	CD977294	Hypothetical protein LOC100193916	-	4e-33	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.17532.1.A1_at	CK369868	hypothetical protein LOC100279205	-	2e-1	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.18290.1.S1_at	BG319707	hypothetical protein LOC100192073	-	4e+0	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.7858.1.A1_at	AY108500.1	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.6051.1.S1_a_at	AY109052.1	-	-	2e+0	At1g72430	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.1972.1.A1_at	CF674994	-	-	2e+1	Atcg00790	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.4164.4.A1_x_at	BM267227	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.15450.1.A1_at	CK827099	-	-	5e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.6484.1.S1_a_at	AY103605.1	ubiquitin-conjugating enzyme E2 7 /// Ubiquitin carrier protein	-	1e-32	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.96	Zm.19175.1.A1_at	CF012464	hypothetical protein LOC100272883	-	2e+0	At1g69780	ATHB13	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.96	Zm.4257.1.S1_at	AW076388	respiratory burst oxidase protein A	-	5e-12	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.96	Zm.17189.1.A1_at	BM268883	-	-	5e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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