CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Z48624_x_at

Gene name
Homology with Arabidopsis Similar to At4g39260: GR-RBP8 (HF=5e-4)

Module size 6 genes

NF 0.30

%ile 40.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.2 0.89 Z48624_x_at Z48624 - - 5e-4 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.46 61.0 0.90 HV04B24u_at HV04B24u - - 2e+1 At5g65260 polyadenylate-binding protein family protein / PABP family protein O.I. H.G. S.X.
0.40 53.1 0.89 HW06C04u_x_at HW06C04u - - 7e+0 At3g05980 unknown protein O.I. H.G. S.X.
0.24 27.2 0.90 HT12H07u_x_at HT12H07u - - 8e+0 At5g64552 CPuORF22 (Conserved peptide upstream open reading frame 22) O.I. H.G. S.X.
0.19 19.6 0.89 S0000800150H08F1_x_at S0000800150H08F1 - - 9e-10 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.17 16.9 0.90 Contig6402_at Contig6402 - - 4e-1 At1g65710 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.81	S0001100125B09F1_x_at	S0001100125B09F1	-	-	7e-1	At5g02770	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.83	HW04M05u_x_at	HW04M05u	-	-	8e-2	At5g23411	unknown protein	O.I.	H.G.	S.X.
0.59	75.8	0.88	Contig14732_at	Contig14732	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.
0.57	74.9	0.86	HW01I10u_x_at	HW01I10u	-	-	6e+0	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.
0.55	72.0	0.90	HY04C04u_at	HY04C04u	-	-	7e-1	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.
0.50	66.9	0.84	HVSMEn0006E24f2_at	HVSMEn0006E24f2	-	-	1e+0	At2g04870	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.85	HD13H12r_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.
0.40	53.1	0.81	Contig19026_at	Contig19026	-	-	2e-5	At3g58510	DEAD box RNA helicase, putative (RH11)	O.I.	H.G.	S.X.
0.33	42.6	0.90	HV14M24u_s_at	HV14M24u	-	-	3e+0	At1g03250	unknown protein	O.I.	H.G.	S.X.
0.30	37.0	0.88	HA12O12u_x_at	HA12O12u	-	-	2e+0	At5g08460	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.29	35.5	0.92	HU10G19u_x_at	HU10G19u	-	-	1e-1	At4g01150	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.89	HW09H11u_at	HW09H11u	-	-	2e-1	At1g17510	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.3 99.7 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.7 99.0 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.0 98.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.3 98.5 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
7.3 98.5 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
7.1 98.4 GSM398249 Martin_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7 98.3 GSM398253 Martin_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1 98.0 GSM398254 Martin_1d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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