CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Z48624_x_at

Gene name
Homology with Arabidopsis Similar to At4g39260: GR-RBP8 (HF=5e-4)

Module size 6 genes

NF 0.30

%ile 40.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.2 0.89 Z48624_x_at Z48624 - - 5e-4 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.46 61.0 0.90 HV04B24u_at HV04B24u - - 2e+1 At5g65260 polyadenylate-binding protein family protein / PABP family protein O.I. H.G. S.X.
0.40 53.1 0.89 HW06C04u_x_at HW06C04u - - 7e+0 At3g05980 unknown protein O.I. H.G. S.X.
0.24 27.2 0.90 HT12H07u_x_at HT12H07u - - 8e+0 At5g64552 CPuORF22 (Conserved peptide upstream open reading frame 22) O.I. H.G. S.X.
0.19 19.6 0.89 S0000800150H08F1_x_at S0000800150H08F1 - - 9e-10 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.17 16.9 0.90 Contig6402_at Contig6402 - - 4e-1 At1g65710 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.3 99.7 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.7 99.0 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.0 98.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.3 98.5 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
7.3 98.5 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
7.1 98.4 GSM398249 Martin_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7 98.3 GSM398253 Martin_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1 98.0 GSM398254 Martin_1d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the maize gene, Zm.1305.1.S1_at, orthologous to the query gene, Z48624_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 Zm.1305.1.S1_at At4g39260 glycine-rich RNA binding protein - 1e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.53 69.1 Zm.3393.1.A1_at At4g39260 - - 1e+0 At5g15530 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2) O.I. H.G. S.X.
0.50 65.7 Zm.2378.1.A1_at At4g39260 - - 8e-10 At1g70750 unknown protein O.I. H.G. S.X.
0.50 65.7 Zm.3699.5.A1_at At4g39260 - - 3e-2 At5g09995 unknown protein O.I. H.G. S.X.
0.50 65.7 Zm.14136.1.A1_at At4g39260 hypothetical protein LOC100193727 - 1e-21 At1g27340 F-box family protein O.I. H.G. S.X.
0.48 61.3 Zm.15451.1.S1_at At4g39260 hypothetical protein LOC100192101 - 5e+0 At2g15830 unknown protein O.I. H.G. S.X.
0.40 48.5 Zm.15194.1.A1_at At4g39260 - - 4e+0 At1g16025 unknown protein O.I. H.G. S.X.
0.38 44.2 Zm.4883.1.A1_at At4g39260 Hypothetical protein LOC100216906 - 2e-5 At1g07530 SCL14 (SCARECROW-LIKE 14) O.I. H.G. S.X.
0.22 16.9 Zm.4385.1.S1_at At4g39260 small nuclear ribonucleoprotein-associated protein B - 3e-15 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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