Co-expression analysis

Gene ID	Z48624_x_at
Gene name
Homology with Arabidopsis	Similar to At4g39260: GR-RBP8 (HF=5e-4)
Module size	6 genes
NF	0.30
%ile	40.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.89	Z48624_x_at	Z48624	-	-	5e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	HV04B24u_at	HV04B24u	-	-	2e+1	At5g65260	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	HW06C04u_x_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.90	HT12H07u_x_at	HT12H07u	-	-	8e+0	At5g64552	CPuORF22 (Conserved peptide upstream open reading frame 22)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.89	S0000800150H08F1_x_at	S0000800150H08F1	-	-	9e-10	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.90	Contig6402_at	Contig6402	-	-	4e-1	At1g65710	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.3	99.7	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.3	98.5	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.1	98.4	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7	98.3	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM398254	Martin_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6970.3.S1_at, orthologous to the query gene, Z48624_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	Ptp.6970.3.S1_at	At4g39260	hypothetical protein	-	4e-1	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	Ptp.2342.2.A1_s_at	At4g39260	hypothetical protein	-	7e-21	At2g26280	CID7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	Ptp.5864.1.S1_at	At4g39260	-	-	1e-10	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.221092.1.S1_at	At4g39260	hypothetical protein	-	3e+0	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.6212.1.S1_at	At4g39260	hypothetical protein	-	2e+1	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.3360.1.S1_at	At4g39260	global transcription factor group	-	4e-1	At1g09415	NIMIN-3 (NIM1-INTERACTING 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.3528.1.S1_at	At4g39260	hypothetical protein	-	2e-44	At4g08170	inositol 1,3,4-trisphosphate 5/6-kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.132632.1.S1_at	At4g39260	-	-	2e-2	At5g58390	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.3942.2.S1_at	At4g39260	hypothetical protein	-	6e-13	At4g26480	KH domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.5596.1.S1_at	At4g39260	-	-	1e+0	At3g12145	FLR1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.4392.1.S1_at	At4g39260	-	-	2e+0	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.3106.1.S1_at	At4g39260	hypothetical protein	-	6e-1	At1g50930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.16335.1.A1_at	At4g39260	hypothetical protein	-	1e+0	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.3157.1.S1_s_at	At4g39260	-	-	9e-1	At1g24350	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.6485.2.S1_at	At4g39260	hypothetical protein	-	4e+0	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.3417.1.S1_at	At4g39260	hypothetical protein	-	4e-8	At2g41070	EEL (ENHANCED EM LEVEL)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.7479.1.S1_at	At4g39260	hypothetical protein	-	1e-6	At5g12230	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.22516.2.S1_at	At4g39260	hypothetical protein	-	5e-2	At1g78890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.78778.1.S1_at	At4g39260	-	-	2e-1	At5g08420	RNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.169.1.S1_at	At4g39260	-	-	4e-1	At3g13130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.111349.1.S1_at	At4g39260	-	-	1e+0	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.13176.5.S1_at	At4g39260	hypothetical protein	-	6e+0	At5g11080	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.39550.1.S1_at	At4g39260	hypothetical protein	-	4e-1	At5g05510	protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.6579.1.A1_a_at	At4g39260	-	-	4e-1	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.28224.2.S1_a_at	At4g39260	hypothetical protein	-	2e-78	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.19327.1.S1_at	At4g39260	-	-	3e-121	At2g19520	FVE	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.7777.1.S1_at	At4g39260	hypothetical protein	-	3e-2	At5g22040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.820.1.A1_at	At4g39260	hypothetical protein	-	6e-13	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.93054.1.S1_at	At4g39260	-	-	6e-1	At2g37920	emb1513 (embryo defective 1513)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.1741.1.A1_at	At4g39260	hypothetical protein	-	1e+0	At1g72660	developmentally regulated GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.22559.1.A1_a_at	At4g39260	hypothetical protein	-	2e+1	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.14672.3.S1_at	At4g39260	hypothetical protein	-	5e-7	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.4909.2.S1_at	At4g39260	hypothetical protein	-	4e-1	At4g15140	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.39611.1.A1_at	At4g39260	hypothetical protein	-	3e-36	At3g21140	FMN binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.22586.1.S1_at	At4g39260	-	-	4e+0	At4g39403	PLS (POLARIS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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