Co-expression analysis

Gene ID	Z48624_x_at
Gene name
Homology with Arabidopsis	Similar to At4g39260: GR-RBP8 (HF=5e-4)
Module size	6 genes
NF	0.30
%ile	40.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.89	Z48624_x_at	Z48624	-	-	5e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	HV04B24u_at	HV04B24u	-	-	2e+1	At5g65260	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	HW06C04u_x_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.90	HT12H07u_x_at	HT12H07u	-	-	8e+0	At5g64552	CPuORF22 (Conserved peptide upstream open reading frame 22)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.89	S0000800150H08F1_x_at	S0000800150H08F1	-	-	9e-10	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.90	Contig6402_at	Contig6402	-	-	4e-1	At1g65710	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.3	99.7	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.3	98.5	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.1	98.4	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7	98.3	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM398254	Martin_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C115000011_at, orthologous to the query gene, Z48624_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	PsAffx.C115000011_at	At4g39260	-	-	3e+0	At4g18100	60S ribosomal protein L32 (RPL32A)	O.I.	H.G.	S.X.	Please select
0.44	63.3	PsAffx.CL1456Contig1_at	At4g39260	-	-	4e+0	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.27	35.7	PsAffx.psHB016xM07f_at	At4g39260	-	-	1e+0	At4g13615	four F5 protein-related / 4F5 protein-related	O.I.	H.G.	S.X.	Please select
0.11	14.2	PsAffx.C22000090_at	At4g39260	-	-	3e-2	At5g55690	MADS-box protein (AGL47)	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.85491.1.S1_s_at	At4g39260	-	-	1e+1	At5g26692	-	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.2820.1.A1_at	At4g39260	-	-	2e-2	At2g47850	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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