CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID V00087.1_at

Gene name
Homology with Arabidopsis Similar to At5g43525: - (HF=3e-1)

Module size 6 genes

NF 0.67

%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 V00087.1_at V00087.1 - - 3e-1 At5g43525 - O.I. H.G. S.X.
0.73 88.7 0.97 HY06F24u_x_at HY06F24u - - 1e+1 At5g05710 pleckstrin homology (PH) domain-containing protein O.I. H.G. S.X.
0.67 84.7 0.97 HVSMEg0002G01r2_x_at HVSMEg0002G01r2 - - 6e+0 At5g39360 EDL2 (EID1-like 2) O.I. H.G. S.X.
0.55 72.0 0.97 HY02C19u_at HY02C19u - - 5e+0 At4g15610 integral membrane family protein O.I. H.G. S.X.
0.50 66.9 0.97 EBro02_SQ008_P15_at EBro02_SQ008_P15 - - 1e+1 At5g43211 unknown protein O.I. H.G. S.X.
0.42 55.2 0.97 EBem04_SQ003_H15_at EBem04_SQ003_H15 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.
0.73	88.7	0.97	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.67	84.7	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.
0.55	72.0	0.97	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.
0.50	66.9	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.
0.42	55.2	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	98.4	0.96	HVSMEm0021I24r2_at	HVSMEm0021I24r2	-	-	3e+0	At1g68650	unknown protein	O.I.	H.G.	S.X.
0.92	98.4	0.96	Contig13086_s_at	Contig13086	-	-	8e+0	At4g33040	glutaredoxin family protein	O.I.	H.G.	S.X.
0.83	94.0	0.94	Contig17826_at	Contig17826	-	-	3e-14	At4g32980	ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)	O.I.	H.G.	S.X.
0.83	94.0	0.94	23381122_R_1101-1898_at	23381122_R_1101-1898	-	-	6e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.
0.80	92.5	0.96	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.80	92.5	0.96	EBro01_SQ004_N24_at	EBro01_SQ004_N24	-	-	4e+0	At3g10770	nucleic acid binding	O.I.	H.G.	S.X.
0.80	92.5	0.96	HZ55F22r_at	HZ55F22r	-	-	4e+0	At4g18740	transcription termination factor	O.I.	H.G.	S.X.
0.77	90.8	0.92	AF427791_CDS-13_at	AF427791_CDS-13	-	-	8e+0	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.77	90.8	0.93	EBro08_SQ010_D12_at	EBro08_SQ010_D12	-	-	2e-1	At5g03550	-	O.I.	H.G.	S.X.
0.77	90.8	0.94	HVSMEh0081G23r2_at	HVSMEh0081G23r2	-	-	1e+1	Atmg00820	-	O.I.	H.G.	S.X.
0.77	90.8	0.96	HVSMEa0012H02f2_at	HVSMEa0012H02f2	-	-	4e+0	At3g02555	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.91	HVSMEn0024A16r2_at	HVSMEn0024A16r2	-	-	2e+0	At1g78790	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.94	HVSMEn0020M17r2_at	HVSMEn0020M17r2	-	-	8e-1	At3g15760	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.95	1200459_Reg_88-1740_at	1200459_Reg_88-1740	-	-	8e-1	At5g41040	transferase family protein	O.I.	H.G.	S.X.
0.73	88.7	0.96	HVSMEa0002D20r2_s_at	HVSMEa0002D20r2	-	-	1e+0	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.
0.71	87.1	0.95	EBem05_SQ001_C10_at	EBem05_SQ001_C10	-	-	5e+0	At3g60200	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.95	HU05B08u_at	HU05B08u	-	-	3e+0	At1g58007	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.96	Contig19421_at	Contig19421	-	-	3e-1	At1g18380	-	O.I.	H.G.	S.X.
0.67	84.7	0.91	HV_CEa0014N20r2_at	HV_CEa0014N20r2	-	-	4e+0	At5g54145	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.91	HV_CEb0011D15r2_s_at	HV_CEb0011D15r2	-	-	1e-6	At5g47870	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.92	HX10P01r_at	HX10P01r	-	-	4e+0	At3g07640	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.93	HVSMEk0006D16r2_x_at	HVSMEk0006D16r2	-	-	5e+0	At1g52690	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.
0.67	84.7	0.95	rbags29h17_at	rbags29h17	-	-	3e+0	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig17471_at	Contig17471	-	-	7e-1	At1g76820	GTP binding / GTPase	O.I.	H.G.	S.X.
0.67	84.7	0.95	HV14K24u_at	HV14K24u	-	-	3e+1	At5g18450	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig3479_at	Contig3479	-	-	4e-15	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig24662_at	Contig24662	-	-	2e-2	At4g01840	KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5)	O.I.	H.G.	S.X.
0.67	84.7	0.95	HVSMEl0020O03r2_at	HVSMEl0020O03r2	-	-	1e+0	At5g06410	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	HU14H15r_at	HU14H15r	-	-	6e-2	At2g36320	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig1926_at	Contig1926	-	-	9e-87	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig17828_at	Contig17828	-	-	9e-2	At2g32885	-	O.I.	H.G.	S.X.
0.67	84.7	0.95	HV14M05r_at	HV14M05r	-	-	9e-2	At5g38490	DNA binding	O.I.	H.G.	S.X.
0.67	84.7	0.96	HC01H02_T3_at	HC01H02_T3	-	-	3e+0	At1g70220	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	HT08O05u_at	HT08O05u	-	-	7e-1	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.
0.67	84.7	0.96	HA31O01r_at	HA31O01r	-	-	3e+0	At2g10970	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	HO09J15S_at	HO09J15S	-	-	9e+0	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	EBro02_SQ001_G12_at	EBro02_SQ001_G12	-	-	6e-2	At2g24190	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	HVSMEm0022H22r2_at	HVSMEm0022H22r2	-	-	6e-1	At2g33590	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig23272_at	Contig23272	-	-	2e+1	At5g44550	integral membrane family protein	O.I.	H.G.	S.X.
0.67	84.7	0.97	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.
0.63	80.3	0.94	rbaal17m22_at	rbaal17m22	-	-	3e-1	At5g28615	-	O.I.	H.G.	S.X.
0.63	80.3	0.94	HVSMEa0005F07r2_s_at	HVSMEa0005F07r2	-	-	4e+0	At4g10613	-	O.I.	H.G.	S.X.
0.63	80.3	0.95	Contig18830_at	Contig18830	-	-	3e+0	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.
0.63	80.3	0.96	Contig25915_at	Contig25915	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.63	80.3	0.97	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.61	78.7	0.90	HVSMEg0015N22r2_at	HVSMEg0015N22r2	-	-	1e+0	At4g28703	-	O.I.	H.G.	S.X.
0.61	78.7	0.93	S0001000017C07F1_at	S0001000017C07F1	-	-	3e+0	At3g55710	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.
0.61	78.7	0.94	baal31g17_at	baal31g17	-	-	9e-1	At3g61970	NGA2 (NGATHA2)	O.I.	H.G.	S.X.
0.61	78.7	0.94	HVSMEb0014G03r2_x_at	HVSMEb0014G03r2	-	-	5e-2	At3g48425	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.
0.61	78.7	0.94	Contig26515_at	Contig26515	-	-	2e+1	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.7 98.9 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.5 98.8 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
7.7 98.6 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.7 98.6 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.9 97.1 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.7	98.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.7	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	V00087.1_at
Gene name
Homology with Arabidopsis	Similar to At5g43525: - (HF=3e-1)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expression analysis

Gene ID V00087.1_at Gene name Homology with ArabidopsisSimilar to At5g43525: - (HF=3e-1) Module size 6 genes NF 0.67 %ile 88.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID V00087.1_at

Gene name
Homology with Arabidopsis Similar to At5g43525: - (HF=3e-1)

Module size 6 genes

NF 0.67

%ile 88.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays