Co-expression analysis

Gene ID	V00087.1_at
Gene name
Homology with Arabidopsis	Similar to At5g43525: - (HF=3e-1)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.7	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1616559_at, orthologous to the query gene, V00087.1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.4	1616559_at	At5g43525	hypothetical protein LOC100254834	-	6e-3	At1g04530	binding	O.I.	H.G.	S.X.	Please select
0.44	64.1	1615139_at	At5g43525	hypothetical protein LOC100264493	-	6e-3	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1619126_s_at	At5g43525	hypothetical protein LOC100264493	-	1e-20	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1618219_at	At5g43525	hypothetical protein LOC100267536	-	3e-10	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.30	39.4	1613390_at	At5g43525	hypothetical protein LOC100255619	-	5e-39	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1615099_s_at	At5g43525	hypothetical protein LOC100242764 /// similar to cytochrome f	-	0	Atcg00540	-	O.I.	H.G.	S.X.	Please select
0.23	27.5	1610716_at	At5g43525	hypothetical protein LOC100265925	-	5e-16	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	1606797_at	At5g43525	similar to 50S ribosomal protein L17, chloroplastic	-	3e-8	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1608437_s_at	At5g43525	hypothetical protein LOC100261000	-	9e-6	At1g73885	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1608606_at	At5g43525	hypothetical protein LOC100250522	-	2e-44	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.19	20.9	1608952_at	At5g43525	hypothetical protein LOC100254862	-	9e-33	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1608628_at	At5g43525	hypothetical protein LOC100262894	-	1e-22	At3g01480	CYP38 (cyclophilin 38)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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