Co-expression analysis

Gene ID TaAffx.99992.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g21720: ICL (ISOCITRATE LYASE) (HF=5e-35)
Module size 6 genes
NF 0.92
%ile 99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.88TaAffx.99992.1.S1_atCA593620--5e-35At3g21720ICL (ISOCITRATE LYASE)O.I.H.G.S.X.
0.9198.20.91TaAffx.79218.1.S1_atCA719564--2e-5At3g21720ICL (ISOCITRATE LYASE)O.I.H.G.S.X.
0.8393.40.88TaAffx.79139.1.S1_atCA720886--5e-2At3g21720ICL (ISOCITRATE LYASE)O.I.H.G.S.X.
0.8393.40.89TaAffx.107330.1.S1_atCA701781--2e+1At1g32790RNA-binding protein, putativeO.I.H.G.S.X.
0.8393.40.90Ta.23989.1.A1_atCA722298--1e-3At3g21720ICL (ISOCITRATE LYASE)O.I.H.G.S.X.
0.7790.80.88Ta.23970.1.A1_x_atCA722098--1e+0At5g48000CYP708A2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.199.9GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
19.499.7GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
18.799.7GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
16.699.6GSM143507Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
16.299.6GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
15.299.6GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
13.299.5GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
12.799.4GSM143505Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
9.699.1GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
7.298.5GSM250905TcLr34_7dpi_mock_rep1GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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