Co-expression analysis

Gene ID TaAffx.99036.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g23040: hydroxyproline-rich glycoprotein family protein (HF=5e+0)
Module size 6 genes
NF 0.84
%ile 98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.92TaAffx.99036.1.A1_atCK211911--5e+0At1g23040hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.8393.40.95Ta.3380.1.S1_atAB042629.1--2e-2At2g36026-O.I.H.G.S.X.
0.7790.80.94Ta.3381.1.S1_atAF123602.1--9e-1At4g31940CYP82C4O.I.H.G.S.X.
0.7389.10.94Ta.10688.1.S1_atAB094060.1indole synthase-3e-3At4g02610tryptophan synthase, alpha subunit, putativeO.I.H.G.S.X.
0.7389.10.97Ta.1362.1.S1_atAB042631.1--1e-2At5g25130CYP71B12O.I.H.G.S.X.
0.6786.30.92Ta.3382.1.S1_atAB042627.1--4e+0At3g21460electron carrier/ protein disulfide oxidoreductaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.499.8GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
21.899.8GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
19.499.7GSM314257tissue type: germinating seed, embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
19.499.7GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
14.699.5GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
11.799.3GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM314265tissue type: seedling, crown - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM314264tissue type: seedling, crown - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.1172.2.S1_at, orthologous to the query gene, TaAffx.99036.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5380.5Ptp.1172.2.S1_atAt1g23040hypothetical protein-9e-7At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.3661.6PtpAffx.210807.1.S1_atAt1g23040hypothetical protein-3e+0At5g25000unknown proteinO.I.H.G.S.X.
0.3357.5Ptp.7515.1.S1_atAt1g23040--2e+0At4g15400transferase family proteinO.I.H.G.S.X.
0.0812.9PtpAffx.58328.1.S1_atAt1g23040--6e+0At1g22270unknown proteinO.I.H.G.S.X.
0.0711.6PtpAffx.203193.1.S1_atAt1g23040--7e-1At5g17480APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)O.I.H.G.S.X.
0.058.3PtpAffx.212385.1.S1_atAt1g23040hypothetical protein-6e-3At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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