CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.9851.1.S1_at

Gene name Dehydration-induced protein
Homology with Arabidopsis Similar to At1g33170: dehydration-responsive family protein (HF=8e-19)

Module size 6 genes

NF 0.26

%ile 42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 78.6 0.95 TaAffx.9851.1.S1_at BJ314167 Dehydration-induced protein - 8e-19 At1g33170 dehydration-responsive family protein O.I. H.G. S.X.
0.33 46.9 0.96 Ta.1684.2.S1_a_at CA648929 - - 6e-5 At4g11010 NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) O.I. H.G. S.X.
0.31 42.7 0.96 Ta.1684.2.S1_x_at CA648929 - - 6e-5 At4g11010 NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) O.I. H.G. S.X.
0.22 27.1 0.96 TaAffx.58965.1.S1_at BJ211727 - - 1e-6 At5g25510 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative O.I. H.G. S.X.
0.15 17.1 0.96 TaAffx.143995.3.S1_s_at AY491968 - - 4e-33 At3g17820 ATGSKB6 O.I. H.G. S.X.
0.14 15.8 0.95 TaAffx.24443.1.S1_at CA719291 - - 9e-1 At1g64710 alcohol dehydrogenase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.2 99.9 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
16.2 99.6 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
12.2 99.4 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
12.1 99.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
11.1 99.3 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
9.9 99.1 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
7.4 98.6 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
7.1 98.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
4.1 96.4 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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