Co-expression analysis

Gene ID	TaAffx.98378.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g37035: unknown protein (HF=7e-2)
Module size	6 genes
NF	0.34
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	TaAffx.98378.1.S1_at	CA735372	-	-	7e-2	At2g37035	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.21086.2.S1_x_at	BJ307886	-	-	3e-16	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.4770.1.S1_x_at	CK162188	-	-	4e-1	At2g28105	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.822.2.S1_x_at	CD901100	-	-	1e-90	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.5	92.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1122.1.S1_at, orthologous to the query gene, TaAffx.98378.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	ZmAffx.1122.1.S1_at	At2g37035	-	-	4e+0	At1g14220	ribonuclease T2 family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.9510.2.A1_a_at	At2g37035	-	-	9e-1	At5g53810	O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.13574.1.A1_at	At2g37035	-	-	2e-12	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.03	1.1	ZmAffx.1084.1.S1_at	At2g37035	-	-	4e+0	At1g31760	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.03	1.1	Zm.14591.1.S1_at	At2g37035	triosephosphate isomerase, cytosolic	-	3e-9	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.02	0.7	Zm.391.1.S1_at	At2g37035	isoflavone reductase-like1	-	2e-4	At1g75290	oxidoreductase, acting on NADH or NADPH	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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