Co-expression analysis

Gene ID	TaAffx.98378.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g37035: unknown protein (HF=7e-2)
Module size	6 genes
NF	0.34
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	TaAffx.98378.1.S1_at	CA735372	-	-	7e-2	At2g37035	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.21086.2.S1_x_at	BJ307886	-	-	3e-16	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.4770.1.S1_x_at	CK162188	-	-	4e-1	At2g28105	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.822.2.S1_x_at	CD901100	-	-	1e-90	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.5	92.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig18823_at, orthologous to the query gene, TaAffx.98378.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig18823_at	At2g37035	-	-	1e-2	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig6765_at	At2g37035	-	-	2e-25	At5g12860	DiT1 (dicarboxylate transporter 1)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig5144_at	At2g37035	-	-	7e-14	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.38	49.5	rbags22i06_at	At2g37035	-	-	1e-3	At2g23140	binding / ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig5295_at	At2g37035	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig6945_at	At2g37035	-	-	3e-12	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig8826_at	At2g37035	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig6946_at	At2g37035	-	-	1e-5	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig12065_at	At2g37035	-	-	1e+0	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig4599_s_at	At2g37035	-	-	2e-1	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig12717_at	At2g37035	-	-	2e-4	At5g60990	DEAD/DEAH box helicase, putative (RH10)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig7725_at	At2g37035	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig6569_at	At2g37035	-	-	1e-56	At5g36880	acetyl-CoA synthetase, putative / acetate-CoA ligase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig10643_at	At2g37035	-	-	1e-1	At1g48140	dolichol-phosphate mannosyltransferase-related	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig7848_at	At2g37035	-	-	3e-5	At3g22110	PAC1	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig12335_at	At2g37035	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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