Co-expression analysis

Gene ID	TaAffx.98378.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g37035: unknown protein (HF=7e-2)
Module size	6 genes
NF	0.34
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	TaAffx.98378.1.S1_at	CA735372	-	-	7e-2	At2g37035	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.21086.2.S1_x_at	BJ307886	-	-	3e-16	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.4770.1.S1_x_at	CK162188	-	-	4e-1	At2g28105	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.822.2.S1_x_at	CD901100	-	-	1e-90	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.5	92.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.27899.1.A1_at, orthologous to the query gene, TaAffx.98378.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	GmaAffx.27899.1.A1_at	At2g37035	-	-	1e-2	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.2057.1.S1_at	At2g37035	-	-	6e-5	At2g30440	chloroplast thylakoidal processing peptidase	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.682.1.S1_at	At2g37035	-	-	2e-23	At5g41390	-	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.8341.1.S1_at	At2g37035	-	-	3e-11	At1g07030	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.8172.1.A1_at	At2g37035	-	-	4e+0	At3g52940	FK (FACKEL)	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.18418.1.S1_at	At2g37035	-	-	8e-1	At5g07475	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.9712.2.S1_at	At2g37035	-	-	6e-3	At1g22020	SHM6 (serine hydroxymethyltransferase 6)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.1372.1.S1_at	At2g37035	-	-	7e-51	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.4404.1.S1_s_at	At2g37035	bZIP transcription factor bZIP59	-	4e-2	At3g62422	CPuORF3 (Conserved peptide upstream open reading frame 3)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.27610.1.S1_s_at	At2g37035	-	-	2e+0	At1g29040	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.2660.1.S1_at	At2g37035	-	-	9e-13	At1g69060	heat shock protein binding	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.84305.1.S1_at	At2g37035	-	-	5e-7	At4g19140	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.7382.1.A1_at	At2g37035	-	-	4e+0	At2g24320	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.2142.1.S1_at	At2g37035	-	-	9e-25	At4g14950	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.3542.1.A1_s_at	At2g37035	-	-	5e-2	At2g38360	PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.10421.1.S1_at	At2g37035	-	-	2e-21	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.827.1.S1_at	At2g37035	-	-	2e-6	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.90199.1.A1_at	At2g37035	-	-	1e-44	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.42647.1.S1_at	At2g37035	-	-	6e-10	At3g16760	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.827.2.S1_x_at	At2g37035	-	-	7e-40	At2g36060	ubiquitin-conjugating enzyme family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.3692.1.S1_at	At2g37035	-	-	2e+0	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.2528.1.S1_at	At2g37035	-	-	2e-7	At3g26780	catalytic	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.6554.2.S1_at	At2g37035	-	-	3e+0	At2g38620	CDKB1	O.I.	H.G.	S.X.	Please select
0.09	12.0	Gma.5868.1.S1_at	At2g37035	-	-	7e-10	At1g19650	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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