Co-expression analysis

Gene ID	TaAffx.98307.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g36950: MAPKKK21 (HF=7e-2)
Module size	6 genes
NF	0.49
%ile	74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.97	TaAffx.98307.1.S1_at	CA649031	-	-	7e-2	At4g36950	MAPKKK21	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	TaAffx.84352.1.S1_at	CA638782	-	-	5e-43	At3g61650	TUBG1 (GAMMA-TUBULIN)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.4932.3.S1_x_at	BJ319726	-	-	4e-28	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.98	Ta.22929.1.S1_at	CA702369	-	-	8e-2	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.6498.1.A1_s_at	BJ228594	-	-	1e+0	At3g45285	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	99.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
10.2	99.2	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
9.1	99.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
8.3	98.8	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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