Co-expression analysis

Gene ID TaAffx.97445.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g56720: protein kinase family protein (HF=6e-3)
Module size 6 genes
NF 0.04
%ile 12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.88TaAffx.97445.1.A1_atCD453857--6e-3At1g56720protein kinase family proteinO.I.H.G.S.X.
0.2532.10.94Ta.5657.1.S1_x_atCD452733--3e-9At5g58490cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.1011.30.94Ta.3057.1.S1_atBJ214808--3e+0At1g04800glycine-rich proteinO.I.H.G.S.X.
0.067.60.93Ta.10089.3.S1_x_atCA663398--3e+0At5g20130unknown proteinO.I.H.G.S.X.
0.034.70.95Ta.9630.2.S1_atCA691213--2e-1At1g80160lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.012.40.95Ta.9306.2.S1_x_atBE493280--6e+0At5g46870RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.799.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.297.5GSM138193genotype B33 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.395.0GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.994.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM138171genotype C31 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.793.3GSM139918Anther leptotene-pachytene rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.692.9GSM139920Anther diplotene-anaphaseI rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.692.9GSM143505Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.149278.1.S1_s_at, orthologous to the query gene, TaAffx.97445.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6388.1PtpAffx.149278.1.S1_s_atAt1g56720hypothetical protein-1e-41At1g67720leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.5078.6PtpAffx.202279.1.S1_s_atAt1g56720hypothetical protein-4e-22At3g61850DAG1 (dof affecting germination 1)O.I.H.G.S.X.
0.5078.6PtpAffx.1912.8.S1_a_atAt1g56720hypothetical protein-9e-2At4g29100ethylene-responsive family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.209957.1.S1_s_atAt1g56720hypothetical protein-1e-19At5g53890leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3357.5PtpAffx.221816.1.S1_s_atAt1g56720hypothetical protein-2e-9At3g48770ATP binding / DNA bindingO.I.H.G.S.X.
0.0914.6PtpAffx.21896.2.S1_s_atAt1g56720hypothetical protein-1e+0At2g02960zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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