Co-expression analysis

Gene ID	TaAffx.97445.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g56720: protein kinase family protein (HF=6e-3)
Module size	6 genes
NF	0.04
%ile	12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.88	TaAffx.97445.1.A1_at	CD453857	-	-	6e-3	At1g56720	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.94	Ta.5657.1.S1_x_at	CD452733	-	-	3e-9	At5g58490	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	Ta.3057.1.S1_at	BJ214808	-	-	3e+0	At1g04800	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	Ta.10089.3.S1_x_at	CA663398	-	-	3e+0	At5g20130	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	Ta.9630.2.S1_at	CA691213	-	-	2e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.95	Ta.9306.2.S1_x_at	BE493280	-	-	6e+0	At5g46870	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.2	97.5	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7	93.3	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.149278.1.S1_s_at, orthologous to the query gene, TaAffx.97445.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	PtpAffx.149278.1.S1_s_at	At1g56720	hypothetical protein	-	1e-41	At1g67720	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.202279.1.S1_s_at	At1g56720	hypothetical protein	-	4e-22	At3g61850	DAG1 (dof affecting germination 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.1912.8.S1_a_at	At1g56720	hypothetical protein	-	9e-2	At4g29100	ethylene-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.209957.1.S1_s_at	At1g56720	hypothetical protein	-	1e-19	At5g53890	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.221816.1.S1_s_at	At1g56720	hypothetical protein	-	2e-9	At3g48770	ATP binding / DNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.21896.2.S1_s_at	At1g56720	hypothetical protein	-	1e+0	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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