CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.97445.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g56720: protein kinase family protein (HF=6e-3)

Module size 6 genes

NF 0.04

%ile 12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.88 TaAffx.97445.1.A1_at CD453857 - - 6e-3 At1g56720 protein kinase family protein O.I. H.G. S.X.
0.25 32.1 0.94 Ta.5657.1.S1_x_at CD452733 - - 3e-9 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.10 11.3 0.94 Ta.3057.1.S1_at BJ214808 - - 3e+0 At1g04800 glycine-rich protein O.I. H.G. S.X.
0.06 7.6 0.93 Ta.10089.3.S1_x_at CA663398 - - 3e+0 At5g20130 unknown protein O.I. H.G. S.X.
0.03 4.7 0.95 Ta.9630.2.S1_at CA691213 - - 2e-1 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.
0.01 2.4 0.95 Ta.9306.2.S1_x_at BE493280 - - 6e+0 At5g46870 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 99.6 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.2 97.5 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3 95.0 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9 94.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8 93.6 GSM138171 genotype C31 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7 93.3 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6 92.9 GSM139920 Anther diplotene-anaphaseI rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6 92.9 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the rice gene, Os10g0174800, orthologous to the query gene, TaAffx.97445.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os10g0174800 At1g56720 - Protein kinase domain containing protein 7e-2 At3g17420 GPK1 O.I. H.G. S.X.
0.04 2.0 Os12g0196300 At1g56720 - Peroxidase precursor (EC 1.11.1.7) 3e+0 At1g01310 allergen V5/Tpx-1-related family protein O.I. H.G. S.X.
0.03 1.4 Os11g0550300 At1g56720 - Conserved hypothetical protein 6e-1 At4g30993 unknown protein O.I. H.G. S.X.
0.01 0.5 Os05g0172400 At1g56720 - - 2e+0 At2g31560 unknown protein O.I. H.G. S.X.
0.01 0.5 Os02g0328800 At1g56720 - - 2e+0 At3g45610 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.01 0.5 Os02g0286700 At1g56720 - Disease resistance protein family protein 3e-1 At2g17880 DNAJ heat shock protein, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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