CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.97445.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g56720: protein kinase family protein (HF=6e-3)

Module size 6 genes

NF 0.04

%ile 12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.88 TaAffx.97445.1.A1_at CD453857 - - 6e-3 At1g56720 protein kinase family protein O.I. H.G. S.X.
0.25 32.1 0.94 Ta.5657.1.S1_x_at CD452733 - - 3e-9 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.10 11.3 0.94 Ta.3057.1.S1_at BJ214808 - - 3e+0 At1g04800 glycine-rich protein O.I. H.G. S.X.
0.06 7.6 0.93 Ta.10089.3.S1_x_at CA663398 - - 3e+0 At5g20130 unknown protein O.I. H.G. S.X.
0.03 4.7 0.95 Ta.9630.2.S1_at CA691213 - - 2e-1 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.
0.01 2.4 0.95 Ta.9306.2.S1_x_at BE493280 - - 6e+0 At5g46870 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 99.6 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.2 97.5 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3 95.0 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9 94.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8 93.6 GSM138171 genotype C31 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7 93.3 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6 92.9 GSM139920 Anther diplotene-anaphaseI rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6 92.9 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g56720, orthologous to the query gene, TaAffx.97445.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At1g56720 842128 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.67 81.6 At3g55420 824708 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.31 33.8 At2g28410 817389 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. H.G. S.X.
0.30 32.1 At5g23860 832451 TUB8 beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. O.I. H.G. S.X.
0.27 26.2 At3g56480 824815 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFV O.I. H.G. S.X.
0.22 17.5 At2g35860 818159 FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) F:unknown;P:cell adhesion;C:endomembrane system;BMPOFAV O.I. H.G. S.X.
0.20 14.4 At3g21190 821672 unknown protein F:unknown;P:unknown;C:Golgi apparatus;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage