Co-expression analysis

Gene ID	TaAffx.97429.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g24190: - (HF=1e+0)
Module size	6 genes
NF	0.13
%ile	26.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.94	TaAffx.97429.2.S1_at	CA648834	-	-	1e+0	At5g24190	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.10089.3.S1_x_at	CA663398	-	-	3e+0	At5g20130	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.94	Ta.21327.1.S1_x_at	CA597040	-	-	5e-12	At2g45070	SEC61 BETA	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.94	Ta.10089.1.S1_x_at	CK195398	-	-	3e-7	At5g64440	AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.95	Ta.14467.2.S1_at	CD912406	-	-	3e-2	At4g34588	CPuORF2 (Conserved peptide upstream open reading frame 2)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.94	Ta.21333.1.S1_x_at	CA671906	-	-	2e-1	At1g35210	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.3	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9	94.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9	94.0	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM138164	genotype D15 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.6	92.9	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM143519	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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