Co-expression analysis

Gene ID TaAffx.97263.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g48930: HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE) (HF=1e+0)
Module size 46 genes
NF 0.22
%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9899.90.89TaAffx.97263.1.S1_atAJ613778--1e+0At5g48930HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)O.I.H.G.S.X.
0.4565.20.90Ta.12373.2.S1_x_atCA737756--5e-1At1g56190phosphoglycerate kinase, putativeO.I.H.G.S.X.
0.4464.50.91TaAffx.110250.4.S1_atCA681765--1e+0At5g22140pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.4159.60.91TaAffx.108284.2.S1_atCA698085--4e+0At3g60450-O.I.H.G.S.X.
0.3753.00.90Ta.25791.1.A1_atCD373963--2e+1At5g45590unknown proteinO.I.H.G.S.X.
0.3753.00.94TaAffx.54245.1.S1_x_atCA684045--5e-1At4g36990HSF4 (HEAT SHOCK FACTOR 4)O.I.H.G.S.X.
0.3549.80.93TaAffx.110125.1.S1_atCA663551--3e+0At1g21620APUM20 (Arabidopsis Pumilio 20)O.I.H.G.S.X.
0.3549.80.93TaAffx.6399.1.S1_atCA686602--2e+1At5g12880proline-rich family proteinO.I.H.G.S.X.
0.3040.90.95TaAffx.66865.1.S1_atCA707529--4e-3At2g43940thiol methyltransferase, putativeO.I.H.G.S.X.
0.3040.90.93TaAffx.8012.1.S1_atCA639773--4e+0At4g26820-O.I.H.G.S.X.
0.3040.90.93TaAffx.28823.1.S1_x_atCA655747--7e-2At3g03990esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.2939.20.93TaAffx.28773.1.S1_atCA656360--9e-1At4g11630ribosomal protein L19 family proteinO.I.H.G.S.X.
0.2939.20.92TaAffx.110302.1.S1_atCA660681--9e-1At2g41150unknown proteinO.I.H.G.S.X.
0.2939.20.90Ta.7442.3.S1_atBQ744271--1e+0At1g54590splicing factor Prp18 family proteinO.I.H.G.S.X.
0.2939.20.92Ta.26086.1.A1_atCD452558receptor-like kinase with LRR repeats-8e-2At5g15960KIN1O.I.H.G.S.X.
0.2735.60.92TaAffx.110110.1.S1_atCA663803--3e+0At3g49845-O.I.H.G.S.X.
0.2633.60.92TaAffx.107715.1.S1_atCA696471--2e-2At1g75550glycine-rich proteinO.I.H.G.S.X.
0.2633.60.92TaAffx.81128.1.S1_atCA689253--1e-2At5g11020ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2430.30.93TaAffx.27751.1.S1_atCA671211--6e-1At1g52200unknown proteinO.I.H.G.S.X.
0.2430.30.92TaAffx.26872.1.S1_atCA683807--2e-2At3g10740ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)O.I.H.G.S.X.
0.2430.30.91TaAffx.92879.1.S1_atBJ243731--1e+0At3g48208-O.I.H.G.S.X.
0.2329.00.93TaAffx.27089.1.S1_atCA681388--4e+0At4g14130XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)O.I.H.G.S.X.
0.2329.00.94TaAffx.86803.2.S1_atCA600331--1e+0At2g46490unknown proteinO.I.H.G.S.X.
0.2227.10.92Ta.6579.2.S1_atBJ245075--4e-9At2g38970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2125.50.92TaAffx.131906.1.S1_atCA731673--4e+0At5g08340riboflavin biosynthesis protein-relatedO.I.H.G.S.X.
0.2125.50.95Ta.8336.2.S1_a_atCA679198--4e+0At5g06270unknown proteinO.I.H.G.S.X.
0.2024.00.92TaAffx.109332.1.S1_x_atCA676976--5e-2At5g53180PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)O.I.H.G.S.X.
0.1922.40.95TaAffx.113370.1.S1_atCA614103--2e-1At5g20165unknown proteinO.I.H.G.S.X.
0.1821.00.94TaAffx.35394.2.A1_atBG906003--3e+0At5g50480NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)O.I.H.G.S.X.
0.1821.00.94TaAffx.31573.1.S1_atCA612853--5e-12At2g40810AtATG18cO.I.H.G.S.X.
0.1821.00.89Ta.5285.2.S1_x_atCA729663--4e+0At3g03000calmodulin, putativeO.I.H.G.S.X.
0.1821.00.93TaAffx.107417.1.S1_atCA700120--1e+1At1g26798Expressed proteinO.I.H.G.S.X.
0.1719.80.93Ta.20812.1.S1_atCA621715--2e-28At3g18290EMB2454 (embryo defective 2454)O.I.H.G.S.X.
0.1719.80.94TaAffx.108578.1.S1_x_atBE430725--1e-1At5g08330TCP family transcription factor, putativeO.I.H.G.S.X.
0.1719.80.91Ta.6155.1.S1_atCD867059--1e-1At3g08890unknown proteinO.I.H.G.S.X.
0.1719.80.95Ta.3564.2.S1_atCA695960--7e-2At5g51310gibberellin 20-oxidase-relatedO.I.H.G.S.X.
0.1719.80.92Ta.7785.2.A1_atBQ172351--3e+0At5g65210TGA1O.I.H.G.S.X.
0.1618.20.93TaAffx.113822.1.S1_atCA613976--7e+0At3g24515UBC37 (ubiquitin-conjugating enzyme 37)O.I.H.G.S.X.
0.1517.10.93Ta.27754.1.S1_x_atCD883562--2e-3At3g45960ATEXLA3 (arabidopsis thaliana expansin-like a3)O.I.H.G.S.X.
0.1415.80.93TaAffx.2187.1.S1_atCK211192--4e-2At3g47300SELT (SELT-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.1415.80.95TaAffx.107805.1.S1_atCA695039--2e-4At2g36790UGT73C6 (UDP-glucosyl transferase 73C6)O.I.H.G.S.X.
0.1415.80.92TaAffx.64864.1.A1_atBJ271960--4e+0At5g15240amino acid transporter family proteinO.I.H.G.S.X.
0.1314.60.94TaAffx.114282.1.S1_atCA721650--1e+0At3g50870MNP (MONOPOLE)O.I.H.G.S.X.
0.1213.30.93Ta.9561.1.A1_x_atCA673761--5e+0At2g3541033 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putativeO.I.H.G.S.X.
0.1011.30.95Ta.10524.1.S1_atCK162419--1e-8At4g31720TAFII15 (TBP-ASSOCIATED FACTOR II 15)O.I.H.G.S.X.
0.0910.40.93Ta.25425.2.S1_a_atBE217040--4e-5At4g08930ATAPRL6 (APR-like 6)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.099.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.496.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.094.3GSM143509Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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