Co-expression analysis

Gene ID	TaAffx.9551.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g36410: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.29
%ile	47.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.91	TaAffx.9551.1.S1_at	CA595241	-	-	1e+0	At2g36410	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.92	TaAffx.79610.1.S1_at	CA711937	-	-	9e-1	At1g26762	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.92	TaAffx.51916.1.S1_at	CA716507	-	-	3e+0	At4g26010	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	TaAffx.23406.1.S1_at	CA735527	-	-	9e-4	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	RPTR-Ta-L36849-1_at	RPTR-Ta-L36849-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.92	Ta.28142.2.S1_at	CA644586	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.0	99.7	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.8	99.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
12.5	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
11.2	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.8	99.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.97582.1.S1_at, orthologous to the query gene, TaAffx.9551.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	PtpAffx.97582.1.S1_at	At2g36410	hypothetical protein	-	1e+0	At5g50335	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.1541.1.S1_at	At2g36410	-	-	8e-4	At1g29670	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.249.4.A1_at	At2g36410	-	-	9e-13	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.2465.1.S1_at	At2g36410	cinnamoyl CoA reductase-like protein	-	1e-2	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.7922.1.S1_at	At2g36410	-	-	2e+0	At2g37300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.249.4.A1_x_at	At2g36410	-	-	9e-13	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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