CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.9551.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g36410: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.29

%ile 47.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.1 0.91 TaAffx.9551.1.S1_at CA595241 - - 1e+0 At2g36410 unknown protein O.I. H.G. S.X.
0.60 81.0 0.92 TaAffx.79610.1.S1_at CA711937 - - 9e-1 At1g26762 unknown protein O.I. H.G. S.X.
0.60 81.0 0.92 TaAffx.51916.1.S1_at CA716507 - - 3e+0 At4g26010 peroxidase, putative O.I. H.G. S.X.
0.27 35.6 0.92 TaAffx.23406.1.S1_at CA735527 - - 9e-4 At3g53610 ATRAB8 O.I. H.G. S.X.
0.23 29.0 0.92 RPTR-Ta-L36849-1_at RPTR-Ta-L36849-1 - - - O.I. H.G. S.X.
0.12 13.3 0.92 Ta.28142.2.S1_at CA644586 - - 3e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.0 99.7 GSM143522 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.8 99.4 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
12.5 99.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
11.2 99.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.8 99.2 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0 98.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.6 95.6 GSM111236 genotype F38b developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2 94.8 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os04g0589900, orthologous to the query gene, TaAffx.9551.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os04g0589900 At2g36410 - HMG-I and HMG-Y, DNA-binding domain containingprotein 9e-1 At3g47120 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.12 7.2 Os07g0259700 At2g36410 - PRLI-interacting factor G (Fragment) 1e+0 At1g53625 unknown protein O.I. H.G. S.X.
0.11 6.5 Os02g0831600 At2g36410 - AGO1 homologous protein 2e-21 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.08 4.2 Os02g0674800 At2g36410 - Homeodomain protein HB2 2e-12 At4g00730 ANL2 (ANTHOCYANINLESS 2) O.I. H.G. S.X.
0.06 3.0 Os05g0482600 At2g36410 - WD40-like domain containing protein 3e-28 At3g54190 - O.I. H.G. S.X.
0.04 2.0 Os07g0694500 At2g36410 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-2 At1g02840 SR1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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