CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.94321.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g62270: anion exchange family protein (HF=2e-4)

Module size 6 genes

NF 0.61

%ile 86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.88 TaAffx.94321.1.S1_at BQ295493 - - 2e-4 At3g62270 anion exchange family protein O.I. H.G. S.X.
0.80 92.2 0.90 Ta.12259.1.A1_at BQ171964 - - 1e+1 At5g02640 unknown protein O.I. H.G. S.X.
0.61 82.0 0.90 TaAffx.12611.1.S1_at BJ249550 - - 2e+1 At5g60615 - O.I. H.G. S.X.
0.57 79.2 0.83 TaAffx.94479.1.S1_at CA741602 - - 7e-2 At1g09560 GLP5 (GERMIN-LIKE PROTEIN 5) O.I. H.G. S.X.
0.36 51.9 0.91 Ta.10443.1.S1_at BJ265826 - - 2e+0 At2g39415 F-box family protein O.I. H.G. S.X.
0.32 44.4 0.88 Ta.27429.1.S1_at BT009018.1 - - 1e-8 At3g01530 AtMYB57 (myb domain protein 57) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.8 99.4 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
11.7 99.3 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
11.3 99.3 GSM139932 Anther mature anthers rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.5 99.1 GSM139933 Anther mature anthers rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.8 98.9 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
8.6 98.9 GSM139931 Anther maturea nthers rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.3 97.6 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.2 97.5 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7 95.8 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4 95.2 GSM139916 Anther leptotene-pachytene rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.202913.1.S1_at, orthologous to the query gene, TaAffx.94321.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 84.9 PtpAffx.202913.1.S1_at At3g62270 anion exchanger family protein - 2e-48 At1g15460 BOR4 (REQUIRES HIGH BORON 4) O.I. H.G. S.X.
0.80 96.0 Ptp.6068.1.S1_s_at At3g62270 hypothetical protein - 2e-38 At5g49900 catalytic/ glucosylceramidase O.I. H.G. S.X.
0.61 87.0 PtpAffx.216718.1.S1_x_at At3g62270 hypothetical protein - 5e-34 At5g49900 catalytic/ glucosylceramidase O.I. H.G. S.X.
0.46 73.7 PtpAffx.388.4.S1_at At3g62270 hypothetical protein - 4e+0 At3g20180 metal ion binding O.I. H.G. S.X.
0.33 57.5 PtpAffx.205774.1.S1_at At3g62270 hypothetical protein - 5e-6 At1g24330 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein O.I. H.G. S.X.
0.30 52.0 PtpAffx.5631.1.A1_at At3g62270 - - 3e-1 At5g39630 vesicle transport v-SNARE family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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