Co-expression analysis

Gene ID	TaAffx.94033.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g23640: HGL1 (heteroglycan glucosidase 1) (HF=3e-7)
Module size	21 genes
NF	0.32
%ile	52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	0.90	TaAffx.94033.1.S1_at	CK162983	-	-	3e-7	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	TaAffx.109197.1.S1_s_at	CA693819	-	-	5e+0	At3g04390	xanthine dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.92	Ta.853.2.S1_at	BG909044	-	-	8e-1	At4g07675	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.94	TaAffx.119544.1.S1_at	BJ268733	-	-	4e-20	At5g20350	TIP1 (TIP GROWTH DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	Ta.27926.2.S1_at	BJ301489	-	-	2e-7	At1g54490	XRN4 (EXORIBONUCLEASE 4)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	TaAffx.41970.1.S1_s_at	BJ223549	-	-	5e+0	At2g24880	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	TaAffx.106359.1.S1_at	CA655213	-	-	3e-1	At4g16780	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	TaAffx.94429.2.S1_s_at	CA678627	-	-	4e+0	At4g33985	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	TaAffx.13369.1.S1_at	BG905284	-	-	1e-21	At4g32180	ATPANK2 (PANTOTHENATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	TaAffx.4780.1.S1_at	CA732154	-	-	8e-17	At3g14270	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.110442.1.S1_at	CA658835	-	-	2e-10	At3g12670	emb2742 (embryo defective 2742)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	Ta.2703.2.S1_at	BQ620481	-	-	1e+0	At5g06410	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	TaAffx.68961.1.S1_at	BJ302431	-	-	2e-7	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.111528.1.S1_at	CA638566	-	-	7e-5	At3g24180	catalytic/ glucosylceramidase	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	TaAffx.97149.1.S1_at	CA603246	-	-	2e+0	At3g21170	F-box family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.6079.3.S1_at	CA651281	-	-	9e-9	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	TaAffx.79938.1.S1_at	CA705498	-	-	5e-19	At3g45450	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	TaAffx.87645.1.S1_at	CA731589	-	-	1e-9	At2g26890	GRV2 (GRAVITROPISM DEFECTIVE 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.78528.1.S1_at	CA731313	-	-	1e+0	At5g20400	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	Ta.7610.3.S1_at	BJ226466	-	-	4e-4	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	Ta.5574.3.S1_at	BJ280663	-	-	4e+0	At5g25000	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.7	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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