Co-expression analysis

Gene ID	TaAffx.93485.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=4e-2)
Module size	13 genes
NF	0.26
%ile	42.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.83	TaAffx.93485.1.S1_at	BJ208688	-	-	4e-2	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.86	TaAffx.22791.1.S1_at	CA744929	-	-	6e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.92	TaAffx.65732.1.A1_at	BJ230119	-	-	2e+0	At5g58412	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.91	Ta.22482.2.S1_x_at	CA680516	-	-	4e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	Ta.22482.1.S1_s_at	AL828309	-	-	3e-2	At1g08710	F-box family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.91	Ta.29516.1.A1_at	CA668641	-	-	5e+0	At5g24690	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.89	Ta.8512.1.S1_at	BQ162001	-	-	7e+0	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	Ta.22482.1.S1_at	AL828309	-	-	3e-2	At1g08710	F-box family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	Ta.7017.1.S1_at	BJ280811	-	-	1e-2	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.91	TaAffx.26308.1.S1_at	CA690131	-	-	6e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.7711.1.A1_at	BQ161212	-	-	6e+0	At5g32450	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.92	TaAffx.70347.1.S1_at	CA682075	-	-	2e+1	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.87	TaAffx.6587.1.S1_at	CA682267	-	-	7e-2	At3g07160	ATGSL10 (glucan synthase-like 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.1	97.5	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.7	97.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM143510	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2	96.6	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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