CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.93151.1.A1_at

Gene name
Homology with Arabidopsis Similar to At4g36770: UDP-glycosyltransferase/ transferase, transferring glycosyl groups (HF=4e-3)

Module size 6 genes

NF 0.31

%ile 51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 76.8 0.94 TaAffx.93151.1.A1_at BJ228434 - - 4e-3 At4g36770 UDP-glycosyltransferase/ transferase, transferring glycosyl groups O.I. H.G. S.X.
0.50 72.4 0.95 Ta.8413.1.A1_at CA703631 - - 1e+0 At4g03960 tyrosine specific protein phosphatase family protein O.I. H.G. S.X.
0.36 51.9 0.95 Ta.29432.1.S1_at BJ215997 - - 1e-2 At1g05530 UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2) O.I. H.G. S.X.
0.35 49.8 0.95 Ta.1382.1.S1_x_at BQ237866 - - 8e-23 At1g64650 - O.I. H.G. S.X.
0.32 44.4 0.94 Ta.9135.2.S1_at BQ172399 - - 4e+0 At3g25190 nodulin, putative O.I. H.G. S.X.
0.14 15.8 0.94 Ta.1382.3.S1_a_at CA637786 - - 3e-10 At4g27720 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.6 98.9 GSM298081 Leaf tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.9 98.4 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0 96.3 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298058 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.0 94.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.8 93.6 GSM314268 tissue type: seedling, leaf - rep3 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os01g0735300, orthologous to the query gene, TaAffx.93151.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os01g0735300 At4g36770 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 9e-4 At5g17050 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) O.I. H.G. S.X.
0.63 82.7 Os07g0288700 At4g36770 - ABC transporter related domain containing protein 3e-1 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) O.I. H.G. S.X.
0.44 58.1 Os12g0178000 At4g36770 - Aldehyde dehydrogenase (EC 1.2.1.3) 9e-2 At4g36250 ALDH3F1 (Aldehyde Dehydrogenase 3F1) O.I. H.G. S.X.
0.40 51.1 Os02g0590100 At4g36770 - Esterase/lipase/thioesterase domain containingprotein 8e+0 At5g43380 TOPP6 O.I. H.G. S.X.
0.33 38.8 Os03g0109800 At4g36770 - Hypothetical protein 2e-1 At4g01985 unknown protein O.I. H.G. S.X.
0.08 4.2 Os01g0293900 At4g36770 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e+0 At1g32920 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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