Co-expression analysis

Gene ID	TaAffx.93151.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g36770: UDP-glycosyltransferase/ transferase, transferring glycosyl groups (HF=4e-3)
Module size	6 genes
NF	0.31
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.8	0.94	TaAffx.93151.1.A1_at	BJ228434	-	-	4e-3	At4g36770	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.8413.1.A1_at	CA703631	-	-	1e+0	At4g03960	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	Ta.29432.1.S1_at	BJ215997	-	-	1e-2	At1g05530	UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	Ta.1382.1.S1_x_at	BQ237866	-	-	8e-23	At1g64650	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	Ta.9135.2.S1_at	BQ172399	-	-	4e+0	At3g25190	nodulin, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	Ta.1382.3.S1_a_at	CA637786	-	-	3e-10	At4g27720	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.9	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.0	94.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the barley gene, Contig11602_at, orthologous to the query gene, TaAffx.93151.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	Contig11602_at	At4g36770	-	-	7e-2	At3g21800	UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)	O.I.	H.G.	S.X.	Please select
0.93	98.7	Contig9052_at	At4g36770	-	-	1e-4	At1g08470	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	HC02E04_T3_at	At4g36770	-	-	8e+0	At1g63060	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig7356_at	At4g36770	-	-	8e-69	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig11327_at	At4g36770	-	-	3e+1	At5g11140	-	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig9050_at	At4g36770	-	-	8e-6	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig24332_at	At4g36770	-	-	6e-5	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig20457_at	At4g36770	-	-	5e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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