Co-expression analysis

Gene ID	TaAffx.92729.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g32160: - (HF=3e-1)
Module size	7 genes
NF	0.42
%ile	67.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.96	TaAffx.92729.1.A1_at	BJ250584	-	-	3e-1	At2g32160	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.4349.1.S1_at	CA703369	-	-	6e-5	At1g53020	UBC26 (UBIQUITIN-CONJUGATING ENZYME 26)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.5516.1.S1_at	CA670594	-	-	2e-56	At1g63830	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.6518.1.S1_at	BJ307082	-	-	2e-5	At4g38900	bZIP protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.14082.1.S1_at	BQ806542	-	-	9e-1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.98	Ta.6096.1.S1_at	CK197541	-	-	3e-3	At1g32050	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.2888.1.S1_at	CA635910	-	-	8e-4	At5g10730	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.9	94.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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