Co-expression analysis

Gene ID	TaAffx.92721.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g27990: YGGT family protein (HF=1e+0)
Module size	34 genes
NF	0.28
%ile	46.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.96	TaAffx.92721.1.A1_at	BJ250943	-	-	1e+0	At4g27990	YGGT family protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.96	Ta.30529.1.S1_at	CD871694	-	-	2e-45	At1g52730	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.25749.1.A1_at	CD373752	-	-	8e-18	At5g13010	EMB3011 (embryo defective 3011)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.96	Ta.11239.1.A1_at	BQ169678	-	-	2e-1	At4g10450	60S ribosomal protein L9 (RPL90D)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.4927.2.A1_a_at	BJ274036	-	-	1e+0	At5g41300	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	TaAffx.48523.2.S1_at	BJ319054	-	-	4e+0	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.97	Ta.12719.1.S1_at	CA608680	-	-	5e-1	At4g19180	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.4661.1.S1_s_at	BG314545	-	-	2e-27	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.9147.1.S1_at	BJ306360	-	-	2e-1	At2g42670	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.7634.1.S1_at	BQ166272	-	-	2e-9	At3g20870	metal transporter family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.29833.1.S1_at	CD492204	-	-	9e-12	At4g30900	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.19524.1.A1_at	CA653004	-	-	5e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.9933.1.S1_at	CD897366	-	-	7e+0	At5g14800	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.9111.1.S1_at	BG908450	-	-	4e+0	At5g02360	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.3448.1.S1_at	CK206881	-	-	6e-1	At3g04560	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.25671.1.A1_at	CD373811	-	-	6e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.2803.1.S1_at	BJ322551	-	-	1e+0	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	TaAffx.101819.1.S1_at	BJ274251	-	-	3e+0	At4g01915	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.22725.2.S1_x_at	CA623055	-	-	3e+0	At5g15330	SPX4 (SPX DOMAIN GENE 4)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.11728.1.S1_at	BQ170684	-	-	2e-3	At1g10310	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.98	Ta.21357.1.S1_at	CK197635	-	-	2e-24	At1g17720	ATB BETA	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.5855.2.S1_x_at	AY230398.1	FCA-A1	-	1e-16	At4g16280	FCA	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.1329.1.S1_at	CD895019	-	-	9e-67	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	TaAffx.800.2.A1_at	BJ261485	-	-	4e-1	At2g15680	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.8183.2.S1_x_at	BQ161549	-	-	1e-1	At1g70400	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	TaAffx.134404.1.A1_at	BJ253379	-	-	4e+0	At4g03505	-	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	TaAffx.9320.1.S1_at	BJ250015	-	-	3e-1	At5g14105	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.98	Ta.2643.1.S1_at	CK154481	-	-	2e-7	At1g71790	F-actin capping protein beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.12680.1.S1_at	CD902436	-	-	3e-21	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.98	Ta.28597.1.S1_at	CF132965	-	-	1e-3	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.98	Ta.4129.1.S1_at	CD913483	-	-	9e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.3039.1.S1_at	CD920575	-	-	1e-6	At3g24740	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.97	Ta.14174.1.S1_at	BG263414	-	-	3e-3	At1g49590	formin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.98	Ta.25019.1.S1_at	BT009274.1	-	-	9e-5	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.9	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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