CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.91458.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g09500: 40S ribosomal protein S15 (RPS15C) (HF=1e+0)

Module size 6 genes

NF 0.15

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.87 TaAffx.91458.1.S1_at BJ317403 - - 1e+0 At5g09500 40S ribosomal protein S15 (RPS15C) O.I. H.G. S.X.
0.36 51.9 0.94 Ta.19265.1.S1_at CA649365 - - 1e+0 At2g16070 PDV2 (PLASTID DIVISION2) O.I. H.G. S.X.
0.22 27.1 0.96 Ta.22398.1.S1_at CA597140 - - 8e+0 At5g20100 unknown protein O.I. H.G. S.X.
0.10 11.3 0.95 TaAffx.19604.1.A1_at BJ309279 - - 3e-1 At5g47090 unknown protein O.I. H.G. S.X.
0.07 8.6 0.94 TaAffx.1833.1.S1_at BJ239476 - - 5e-1 At4g37409 unknown protein O.I. H.G. S.X.
0.05 6.7 0.94 TaAffx.39988.1.A1_at BJ275531 - - 4e+0 At5g52740 heavy-metal-associated domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.4 98.6 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.3 97.6 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298086 Crown tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.9 96.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM138207 genotype B11 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3 95.0 GSM143499 Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2 94.8 GSM138153 genotype G32 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2 94.8 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the grape gene, 1616806_at, orthologous to the query gene, TaAffx.91458.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 1616806_at At5g09500 hypothetical protein LOC100259004 - 6e-2 At2g01340 unknown protein O.I. H.G. S.X.
0.77 92.3 1610567_at At5g09500 - - 3e-5 At3g48185 unknown protein O.I. H.G. S.X.
0.50 72.7 1608586_at At5g09500 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 O.I. H.G. S.X.
0.33 45.7 1613355_at At5g09500 hypothetical protein LOC100260952 - 6e-12 At5g07360 amidase family protein O.I. H.G. S.X.
0.25 30.5 1613351_at At5g09500 hypothetical protein LOC100252023 - 2e-1 At5g12970 C2 domain-containing protein O.I. H.G. S.X.
0.18 19.4 1609302_at At5g09500 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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