Co-expression analysis

Gene ID	TaAffx.91458.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g09500: 40S ribosomal protein S15 (RPS15C) (HF=1e+0)
Module size	6 genes
NF	0.15
%ile	27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.87	TaAffx.91458.1.S1_at	BJ317403	-	-	1e+0	At5g09500	40S ribosomal protein S15 (RPS15C)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	Ta.19265.1.S1_at	CA649365	-	-	1e+0	At2g16070	PDV2 (PLASTID DIVISION2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.22398.1.S1_at	CA597140	-	-	8e+0	At5g20100	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.95	TaAffx.19604.1.A1_at	BJ309279	-	-	3e-1	At5g47090	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.94	TaAffx.1833.1.S1_at	BJ239476	-	-	5e-1	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.94	TaAffx.39988.1.A1_at	BJ275531	-	-	4e+0	At5g52740	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.6	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.3	97.6	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.9	96.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM143499	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the barley gene, HVSMEk0022L04r2_s_at, orthologous to the query gene, TaAffx.91458.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	HVSMEk0022L04r2_s_at	At5g09500	-	-	9e-1	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig10881_at	At5g09500	-	-	4e+0	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.28	35.5	rbags5f04_s_at	At5g09500	-	-	2e+0	At3g61678	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig11533_at	At5g09500	-	-	1e-1	At5g05070	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig21378_at	At5g09500	-	-	1e-1	At3g24070	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig17753_at	At5g09500	-	-	8e-2	At3g09880	ATB' BETA	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig17419_at	At5g09500	-	-	2e-2	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig16379_s_at	At5g09500	-	-	3e-1	At2g44080	ARL (ARGOS-LIKE)	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig16787_at	At5g09500	-	-	2e+0	At3g11320	organic anion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig8078_at	At5g09500	-	-	7e-26	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig9141_at	At5g09500	-	-	8e-4	At5g08030	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig13746_at	At5g09500	-	-	8e-10	At1g23540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig13117_at	At5g09500	-	-	6e-1	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig24535_at	At5g09500	-	-	2e-1	At3g51220	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig10680_at	At5g09500	-	-	5e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig1503_s_at	At5g09500	-	-	2e-168	At5g62700	TUB3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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