Co-expression analysis

Gene ID TaAffx.91458.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g09500: 40S ribosomal protein S15 (RPS15C) (HF=1e+0)
Module size 6 genes
NF 0.15
%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.87TaAffx.91458.1.S1_atBJ317403--1e+0At5g0950040S ribosomal protein S15 (RPS15C)O.I.H.G.S.X.
0.3651.90.94Ta.19265.1.S1_atCA649365--1e+0At2g16070PDV2 (PLASTID DIVISION2)O.I.H.G.S.X.
0.2227.10.96Ta.22398.1.S1_atCA597140--8e+0At5g20100unknown proteinO.I.H.G.S.X.
0.1011.30.95TaAffx.19604.1.A1_atBJ309279--3e-1At5g47090unknown proteinO.I.H.G.S.X.
0.078.60.94TaAffx.1833.1.S1_atBJ239476--5e-1At4g37409unknown proteinO.I.H.G.S.X.
0.056.70.94TaAffx.39988.1.A1_atBJ275531--4e+0At5g52740heavy-metal-associated domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.498.6GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.597.8GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.397.6GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM324491Si+ B- rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.996.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM138207genotype B11 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.395.0GSM143499Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.294.8GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.294.8GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g09500, orthologous to the query gene, TaAffx.91458.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5065.3At5g0950083080940S ribosomal protein S15 (RPS15C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.H.G.S.X.
0.8391.4At3g02670821280proline-rich family proteinF:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVAO.I.H.G.S.X.
0.8391.4At5g12060831079self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7788.0At5g58820835999subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.H.G.S.X.
0.6378.1At3g24790822077ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.H.G.S.X.
0.6075.7At1g73610843695GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.H.G.S.X.
0.5773.8At2g43660818968glycosyl hydrolase family protein 17F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5673.0At4g35725829725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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