Co-expression analysis

Gene ID TaAffx.91428.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g21450: vesicle-associated membrane family protein / VAMP family protein (HF=3e+0)
Module size 6 genes
NF 0.67
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.94TaAffx.91428.1.S1_atBJ313181--3e+0At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.8092.20.96Ta.6965.1.S1_atBJ313225--3e+0At3g03847auxin-responsive family proteinO.I.H.G.S.X.
0.6786.30.94Ta.10650.1.A1_atBQ166187--4e+0At4g24026unknown proteinO.I.H.G.S.X.
0.6786.30.95TaAffx.16068.1.S1_atBQ168935--1e+0At1g33260protein kinase family proteinO.I.H.G.S.X.
0.5779.20.95Ta.14323.1.S1_atBU100287--1e+1At4g18593dual specificity protein phosphatase-relatedO.I.H.G.S.X.
0.4869.00.92Ta.15859.1.S1_atBJ310415--1e+0At5g50070invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.9GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.797.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.597.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.596.9GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.196.4GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.695.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.29063.1.A1_at, orthologous to the query gene, TaAffx.91428.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6388.1PtpAffx.29063.1.A1_atAt4g21450--7e-1At5g18300anac088 (Arabidopsis NAC domain containing protein 88)O.I.H.G.S.X.
0.1118.1PtpAffx.213022.1.S1_atAt4g21450hypothetical protein-8e-7At4g02290AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)O.I.H.G.S.X.
0.0914.6PtpAffx.212993.1.S1_atAt4g21450hypothetical protein-3e-1At1g10155ATPP2-A10 (PHLOEM PROTEIN 2-A10)O.I.H.G.S.X.
0.0711.6PtpAffx.223825.1.S1_atAt4g21450hypothetical protein-1e+0At1g80860PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE)O.I.H.G.S.X.
0.069.8PtpAffx.137683.1.S1_atAt4g21450hypothetical protein-1e-31At1g77120ADH1 (ALCOHOL DEHYDROGENASE 1)O.I.H.G.S.X.
0.035.2PtpAffx.210916.1.S1_atAt4g21450hypothetical protein-1e-40At1g54960ANP2O.I.H.G.S.X.
0.012.2PtpAffx.43408.1.S1_atAt4g21450hypothetical protein-7e-20At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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