CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.91428.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g21450: vesicle-associated membrane family protein / VAMP family protein (HF=3e+0)

Module size 6 genes

NF 0.67

%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.94 TaAffx.91428.1.S1_at BJ313181 - - 3e+0 At4g21450 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.
0.80 92.2 0.96 Ta.6965.1.S1_at BJ313225 - - 3e+0 At3g03847 auxin-responsive family protein O.I. H.G. S.X.
0.67 86.3 0.94 Ta.10650.1.A1_at BQ166187 - - 4e+0 At4g24026 unknown protein O.I. H.G. S.X.
0.67 86.3 0.95 TaAffx.16068.1.S1_at BQ168935 - - 1e+0 At1g33260 protein kinase family protein O.I. H.G. S.X.
0.57 79.2 0.95 Ta.14323.1.S1_at BU100287 - - 1e+1 At4g18593 dual specificity protein phosphatase-related O.I. H.G. S.X.
0.48 69.0 0.92 Ta.15859.1.S1_at BJ310415 - - 1e+0 At5g50070 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.9 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.7 97.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5 97.8 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5 96.9 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.1 96.4 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6 95.6 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3 95.0 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g21450, orthologous to the query gene, TaAffx.91428.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.89 94.6 At4g21450 826300 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV O.I. H.G. S.X.
0.57 73.8 At4g05060 825848 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:chloroplast;PMFO O.I. H.G. S.X.
0.40 50.8 At4g39910 830150 ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) Encodes a nuclear ubiquitin-specific protease. O.I. H.G. S.X.
0.25 22.6 At1g64040 842708 TOPP3 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. O.I. H.G. S.X.
0.18 11.4 At2g21240 816663 BPC4 (BASIC PENTACYSTEINE 4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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