Co-expression analysis

Gene ID TaAffx.8950.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g04730: IAA16 (HF=5e-2)
Module size 6 genes
NF 0.00
%ile 0.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.79TaAffx.8950.1.S1_atCA617565--5e-2At3g04730IAA16O.I.H.G.S.X.
0.1415.80.86TaAffx.25737.1.S1_atCA696689--3e+0At2g41470unknown proteinO.I.H.G.S.X.
0.034.70.87TaAffx.122619.1.S1_atCA731643--4e+0At4g18500unknown proteinO.I.H.G.S.X.
-0.70.87TaAffx.106711.1.S1_atCA713161--1e+1Atmg01140-O.I.H.G.S.X.
-0.70.88Ta.7537.2.S1_x_atCA648066--1e+0At5g22390unknown proteinO.I.H.G.S.X.
-0.70.86TaAffx.12357.1.S1_atBJ269842--2e-2At1g49400emb1129 (embryo defective 1129)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
20.399.7GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
20.099.7GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
14.599.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM138210genotype B65 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.897.2GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.294.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.2574.1.A1_at, orthologous to the query gene, TaAffx.8950.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5775.1Zm.2574.1.A1_atAt3g04730hypothetical protein LOC100274571-6e-2At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.8395.6Zm.1668.1.A1_atAt3g04730hypothetical protein LOC100193513-2e-3At2g25740ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.6785.8Zm.6659.1.A1_atAt3g04730pathogenesis related protein-5-6e-1At1g32763-O.I.H.G.S.X.
0.6179.5Zm.272.1.A1_atAt3g04730ferredoxin-7e-75At5g66190FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)O.I.H.G.S.X.
0.5369.1Zm.15266.1.S1_atAt3g04730--3e-1At4g16880disease resistance protein-relatedO.I.H.G.S.X.
0.4658.4Zm.17574.1.A1_atAt3g04730hypothetical protein LOC100216965-5e-8At2g02810UTR1 (UDP-GALACTOSE TRANSPORTER 1)O.I.H.G.S.X.
0.4048.5Zm.18324.1.A1_atAt3g04730aspartic proteinase nepenthesin-2-6e+0At3g11580DNA-binding protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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