Co-expression analysis

Gene ID	TaAffx.8950.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g04730: IAA16 (HF=5e-2)
Module size	6 genes
NF	0.00
%ile	0.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.79	TaAffx.8950.1.S1_at	CA617565	-	-	5e-2	At3g04730	IAA16	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.86	TaAffx.25737.1.S1_at	CA696689	-	-	3e+0	At2g41470	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.87	TaAffx.122619.1.S1_at	CA731643	-	-	4e+0	At4g18500	unknown protein	O.I.	H.G.	S.X.	Please select
-	0.7	0.87	TaAffx.106711.1.S1_at	CA713161	-	-	1e+1	Atmg01140	-	O.I.	H.G.	S.X.	Please select
-	0.7	0.88	Ta.7537.2.S1_x_at	CA648066	-	-	1e+0	At5g22390	unknown protein	O.I.	H.G.	S.X.	Please select
-	0.7	0.86	TaAffx.12357.1.S1_at	BJ269842	-	-	2e-2	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.8	99.8	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
20.3	99.7	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
14.5	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.8	97.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.2574.1.A1_at, orthologous to the query gene, TaAffx.8950.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	Zm.2574.1.A1_at	At3g04730	hypothetical protein LOC100274571	-	6e-2	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.1668.1.A1_at	At3g04730	hypothetical protein LOC100193513	-	2e-3	At2g25740	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.6659.1.A1_at	At3g04730	pathogenesis related protein-5	-	6e-1	At1g32763	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.272.1.A1_at	At3g04730	ferredoxin	-	7e-75	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.15266.1.S1_at	At3g04730	-	-	3e-1	At4g16880	disease resistance protein-related	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.17574.1.A1_at	At3g04730	hypothetical protein LOC100216965	-	5e-8	At2g02810	UTR1 (UDP-GALACTOSE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.18324.1.A1_at	At3g04730	aspartic proteinase nepenthesin-2	-	6e+0	At3g11580	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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