Co-expression analysis

Gene ID	TaAffx.8950.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g04730: IAA16 (HF=5e-2)
Module size	6 genes
NF	0.00
%ile	0.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.79	TaAffx.8950.1.S1_at	CA617565	-	-	5e-2	At3g04730	IAA16	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.86	TaAffx.25737.1.S1_at	CA696689	-	-	3e+0	At2g41470	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.87	TaAffx.122619.1.S1_at	CA731643	-	-	4e+0	At4g18500	unknown protein	O.I.	H.G.	S.X.	Please select
-	0.7	0.87	TaAffx.106711.1.S1_at	CA713161	-	-	1e+1	Atmg01140	-	O.I.	H.G.	S.X.	Please select
-	0.7	0.88	Ta.7537.2.S1_x_at	CA648066	-	-	1e+0	At5g22390	unknown protein	O.I.	H.G.	S.X.	Please select
-	0.7	0.86	TaAffx.12357.1.S1_at	BJ269842	-	-	2e-2	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.8	99.8	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
20.3	99.7	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
14.5	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.8	97.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1613813_a_at, orthologous to the query gene, TaAffx.8950.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	1613813_a_at	At3g04730	-	-	3e-11	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.80	93.6	1606999_at	At3g04730	hypothetical protein LOC100265295	-	3e-2	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please select
0.77	92.3	1611599_at	At3g04730	hypothetical protein LOC100250312	-	1e-1	At1g78190	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	1610968_at	At3g04730	similar to cysteine proteinase inhibitor	-	3e-11	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	1608442_at	At3g04730	ornithine aminotransferase	-	8e-60	At5g46180	delta-OAT	O.I.	H.G.	S.X.	Please select
0.46	66.5	1618344_at	At3g04730	hypothetical protein LOC100266422	-	2e-5	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage