Co-expression analysis

Gene ID TaAffx.8950.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g04730: IAA16 (HF=5e-2)
Module size 6 genes
NF 0.00
%ile 0.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.79TaAffx.8950.1.S1_atCA617565--5e-2At3g04730IAA16O.I.H.G.S.X.
0.1415.80.86TaAffx.25737.1.S1_atCA696689--3e+0At2g41470unknown proteinO.I.H.G.S.X.
0.034.70.87TaAffx.122619.1.S1_atCA731643--4e+0At4g18500unknown proteinO.I.H.G.S.X.
-0.70.87TaAffx.106711.1.S1_atCA713161--1e+1Atmg01140-O.I.H.G.S.X.
-0.70.88Ta.7537.2.S1_x_atCA648066--1e+0At5g22390unknown proteinO.I.H.G.S.X.
-0.70.86TaAffx.12357.1.S1_atBJ269842--2e-2At1g49400emb1129 (embryo defective 1129)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
20.399.7GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
20.099.7GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
14.599.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM138210genotype B65 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.897.2GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.294.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0927600, orthologous to the query gene, TaAffx.8950.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5371.3Os01g0927600At3g04730-AUX/IAA protein family protein6e-28At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.3134.5Os01g0872700At3g04730-Putative 5-3 exonuclease domain containing protein2e-19At1g75660XRN3O.I.H.G.S.X.
0.2321.2Os06g0111400At3g04730-Guanine nucleotide binding protein (G-protein),alpha subunit family protein7e-40At1g31930XLG3 (extra-large GTP-binding protein 3)O.I.H.G.S.X.
0.2219.4Os05g0411300At3g04730-Conserved hypothetical protein1e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.149.3Os08g0492100At3g04730-Paraneoplastic encephalomyelitis antigen familyprotein5e-8At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.094.9Os01g0911100At3g04730-ATP-dependent RNA helicase-like protein1e-17At5g63120ethylene-responsive DEAD box RNA helicase, putative (RH30)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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