CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.8950.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g04730: IAA16 (HF=5e-2)

Module size 6 genes

NF 0.00

%ile 0.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.79 TaAffx.8950.1.S1_at CA617565 - - 5e-2 At3g04730 IAA16 O.I. H.G. S.X.
0.14 15.8 0.86 TaAffx.25737.1.S1_at CA696689 - - 3e+0 At2g41470 unknown protein O.I. H.G. S.X.
0.03 4.7 0.87 TaAffx.122619.1.S1_at CA731643 - - 4e+0 At4g18500 unknown protein O.I. H.G. S.X.
- 0.7 0.87 TaAffx.106711.1.S1_at CA713161 - - 1e+1 Atmg01140 - O.I. H.G. S.X.
- 0.7 0.88 Ta.7537.2.S1_x_at CA648066 - - 1e+0 At5g22390 unknown protein O.I. H.G. S.X.
- 0.7 0.86 TaAffx.12357.1.S1_at BJ269842 - - 2e-2 At1g49400 emb1129 (embryo defective 1129) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.8 99.8 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
20.3 99.7 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
20.0 99.7 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
14.5 99.5 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.9 98.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM138210 genotype B65 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.8 97.2 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2 94.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os01g0927600, orthologous to the query gene, TaAffx.8950.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 Os01g0927600 At3g04730 - AUX/IAA protein family protein 6e-28 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) O.I. H.G. S.X.
0.31 34.5 Os01g0872700 At3g04730 - Putative 5-3 exonuclease domain containing protein 2e-19 At1g75660 XRN3 O.I. H.G. S.X.
0.23 21.2 Os06g0111400 At3g04730 - Guanine nucleotide binding protein (G-protein),alpha subunit family protein 7e-40 At1g31930 XLG3 (extra-large GTP-binding protein 3) O.I. H.G. S.X.
0.22 19.4 Os05g0411300 At3g04730 - Conserved hypothetical protein 1e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.14 9.3 Os08g0492100 At3g04730 - Paraneoplastic encephalomyelitis antigen familyprotein 5e-8 At3g13224 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.09 4.9 Os01g0911100 At3g04730 - ATP-dependent RNA helicase-like protein 1e-17 At5g63120 ethylene-responsive DEAD box RNA helicase, putative (RH30) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage