Co-expression analysis

Gene ID	TaAffx.8949.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g47770: FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) (HF=2e-1)
Module size	29 genes
NF	0.21
%ile	35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	0.83	TaAffx.8949.1.S1_at	CA617569	-	-	2e-1	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.90	TaAffx.79027.1.S1_at	CA723622	-	-	3e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.89	TaAffx.105810.1.S1_at	CA729560	-	-	4e+0	At1g51670	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.90	TaAffx.80484.1.S1_at	CA696354	-	-	4e+0	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.88	TaAffx.105862.1.S1_at	CA728823	-	-	5e+0	At4g08740	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	TaAffx.106823.1.S1_at	CA710938	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.92	Ta.14018.3.S1_x_at	CA698147	-	-	2e-2	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	TaAffx.115066.2.S1_at	CA618856	-	-	4e-28	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.59565.1.S1_at	CA598863	-	-	4e-3	At1g27620	transferase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.106823.1.S1_x_at	CA710938	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	Ta.17404.1.S1_at	CA620518	-	-	2e-11	At5g02610	60S ribosomal protein L35 (RPL35D)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.87	TaAffx.112999.1.S1_s_at	CA621290	-	-	4e+0	At3g08000	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	TaAffx.78444.3.S1_at	CA678786	-	-	4e+0	At4g32870	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	TaAffx.8672.1.S1_at	CA621765	-	-	1e-3	At1g36240	60S ribosomal protein L30 (RPL30A)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	Ta.14479.3.S1_x_at	CA630294	-	-	7e-18	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.24940.1.S1_at	CA709562	-	-	4e+0	At5g63690	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.91	Ta.17285.1.S1_at	CA619345	-	-	4e+0	At5g55680	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.92	Ta.24647.1.S1_s_at	CA625453	-	-	9e-23	At5g56710	60S ribosomal protein L31 (RPL31C)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.92	TaAffx.12407.1.S1_at	BJ266791	-	-	6e-4	At2g45710	40S ribosomal protein S27 (RPS27A)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.86	TaAffx.105294.1.S1_at	CA736582	-	-	1e+1	At3g60270	uclacyanin, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.93	Ta.26385.1.A1_at	CD490935	-	-	2e-15	At3g55770	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	Ta.17476.1.S1_x_at	CA626225	-	-	4e-3	At1g52300	60S ribosomal protein L37 (RPL37B)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.91	Ta.3474.2.S1_x_at	CA720680	-	-	4e+0	Atmg00200	-	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.93	TaAffx.121900.2.S1_x_at	CA661067	-	-	1e+0	At3g15910	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.92	Ta.18576.1.A1_at	CA638985	-	-	2e+1	At4g14060	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.92	Ta.26059.1.A1_at	CD453800	-	-	6e-9	At5g47750	D6PKL2 (D6 PROTEIN KINASE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.90	Ta.29468.1.S1_at	CA630486	-	-	1e+0	At2g03937	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.7	97.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.2	96.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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