Co-expression analysis

Gene ID TaAffx.89243.1.S1_at
Gene name auxin response factor 2
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=2e-3)
Module size 26 genes
NF 0.35
%ile 56.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8994.60.84TaAffx.89243.1.S1_atAL828593auxin response factor 2-2e-3At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.5374.90.94TaAffx.78528.1.S1_atCA731313--1e+0At5g20400oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.5072.40.91TaAffx.65596.1.S1_atBJ236557--5e-55At1g80070SUS2 (ABNORMAL SUSPENSOR 2)O.I.H.G.S.X.
0.5072.40.95TaAffx.120957.1.S1_atCF133813--4e-1At5g37380DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4464.50.95TaAffx.4840.1.S1_atCA730672--1e+0At2g21060ATGRP2B (GLYCINE-RICH PROTEIN 2B)O.I.H.G.S.X.
0.4260.90.93TaAffx.91570.1.S1_s_atBG262275--1e-3At1g17210zinc ion bindingO.I.H.G.S.X.
0.4159.60.95TaAffx.91777.1.S1_atBQ239662--1e-17At4g05420DDB1A (DAMAGED DNA BINDING PROTEIN 1A)O.I.H.G.S.X.
0.3854.70.96TaAffx.119574.2.S1_s_atCA604787--7e-2At3g56580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3854.70.94TaAffx.103561.1.S1_atBJ245892protein kinase-3e+0At5g38800AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)O.I.H.G.S.X.
0.3651.90.93Ta.6363.2.S1_atBJ302666--1e+0At4g38080hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3549.80.94TaAffx.106123.1.S1_atCA724387--9e-10At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.3448.10.94TaAffx.32540.1.S1_atCA593343--3e-7At1g43850SEU (seuss)O.I.H.G.S.X.
0.3346.90.96TaAffx.119574.1.S1_atBJ267748--2e+0At1g69010BIM2 (BES1-interacting Myc-like protein 2)O.I.H.G.S.X.
0.3346.90.95Ta.9312.2.S1_atBJ317071--4e-1At1g55890pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3346.90.93TaAffx.81227.2.S1_atCA713643--3e-28At1g74260PUR4 (purine biosynthesis 4)O.I.H.G.S.X.
0.3244.40.94TaAffx.11973.1.S1_atBJ308633--1e+0At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.3142.70.93TaAffx.13342.1.S1_atBJ274574--7e-12At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.
0.3040.90.94Ta.27926.2.S1_atBJ301489--2e-7At1g54490XRN4 (EXORIBONUCLEASE 4)O.I.H.G.S.X.
0.2939.20.95TaAffx.114829.1.S1_atCA734325--1e+0At5g38895zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2839.20.93TaAffx.113958.1.S1_atCA600659--3e-1At3g47620AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)O.I.H.G.S.X.
0.2839.20.94Ta.7626.3.S1_atBI751920Ca2+ binding protein cbp1-6e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.2839.20.94TaAffx.120204.1.S1_atBJ243541--8e-8At3g20780ATTOP6B (topoisomerase 6 subunit B)O.I.H.G.S.X.
0.2532.10.95TaAffx.81976.1.S1_s_atCA679498--1e+0At4g24950unknown proteinO.I.H.G.S.X.
0.2430.30.94TaAffx.9396.1.S1_atCA600098--1e+0At2g19310-O.I.H.G.S.X.
0.1821.00.95TaAffx.50834.1.S1_atCA734839--5e-1At3g16970self-incompatibility protein-relatedO.I.H.G.S.X.
0.1517.10.93TaAffx.80232.1.S1_s_atCA699590--2e-1At3g0256040S ribosomal protein S7 (RPS7B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.9GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.597.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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