Co-expression analysis

Gene ID TaAffx.88060.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g34690: ACD11 (ACCELERATED CELL DEATH 11) (HF=7e-9)
Module size 6 genes
NF 0.06
%ile 15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.76TaAffx.88060.1.S1_atCA624461--7e-9At2g34690ACD11 (ACCELERATED CELL DEATH 11)O.I.H.G.S.X.
0.2227.10.92Ta.30897.1.S1_atCN012393--1e+0At5g5671060S ribosomal protein L31 (RPL31C)O.I.H.G.S.X.
0.067.60.92TaAffx.30077.1.S1_atCA629134--9e-1At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.056.70.90Ta.9782.3.S1_a_atCA647168--4e+0At2g27930bindingO.I.H.G.S.X.
0.023.60.92TaAffx.111909.1.S1_atCA630666--2e+1At5g09250KIWIO.I.H.G.S.X.
0.023.60.94TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.498.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.798.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.896.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM139922Anther telophaseI-telophaseII rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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