Co-expression analysis

Gene ID	TaAffx.8802.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g04760: myb family transcription factor (HF=4e+0)
Module size	6 genes
NF	0.15
%ile	28.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.81	TaAffx.8802.1.S1_at	CA620016	-	-	4e+0	At5g04760	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	TaAffx.13285.1.S1_at	BG910034	-	-	3e+0	At5g62210	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.38268.1.A1_at	BJ242361	-	-	1e+0	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.94	Ta.6893.1.A1_at	BQ807133	-	-	4e-1	At4g31800	WRKY18	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.94	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	99.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.4	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.4	99.2	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.8	99.1	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.6	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.8	98.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the grape gene, 1622818_x_at, orthologous to the query gene, TaAffx.8802.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1622818_x_at	At5g04760	-	-	2e+1	At5g64541	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	1620295_at	At5g04760	-	-	9e-11	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1613578_s_at	At5g04760	hypothetical protein LOC100258843	-	4e-29	At2g47490	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	1613637_at	At5g04760	-	-	4e+0	At2g12905	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1612957_at	At5g04760	hypothetical protein LOC100248904	-	3e-10	At1g22310	MBD8	O.I.	H.G.	S.X.	Please select
0.01	2.1	1619151_at	At5g04760	hypothetical protein LOC100252844	-	1e-19	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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