Co-expression analysis

Gene ID TaAffx.86939.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g35700: ERF38 (ERF FAMILY PROTEIN 38) (HF=4e-3)
Module size 6 genes
NF 0.03
%ile 8.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.77TaAffx.86939.1.S1_atCA598527--4e-3At2g35700ERF38 (ERF FAMILY PROTEIN 38)O.I.H.G.S.X.
0.2329.00.89TaAffx.79639.1.S1_atCA711551--4e+0At1g17970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.0910.40.81TaAffx.114291.1.S1_atCA595540--1e+0At1g11520pliceosome associated protein-relatedO.I.H.G.S.X.
0.045.80.88RPTR-Ta-L36849-1_atRPTR-Ta-L36849-1---O.I.H.G.S.X.
0.023.60.89TaAffx.31195.1.S1_atCA618611--8e-1At1g21770-O.I.H.G.S.X.
0.012.40.88TaAffx.78834.1.S1_x_atCA727217--4e-3At2g21330fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.399.7GSM143522Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
10.699.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.099.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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