Co-expression analysis

Gene ID	TaAffx.86506.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g22920: zinc finger (C3HC4-type RING finger) family protein (HF=7e-2)
Module size	6 genes
NF	0.16
%ile	29.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.76	TaAffx.86506.2.S1_x_at	CA731681	-	-	7e-2	At5g22920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.19167.1.S1_at	CD873251	-	-	1e+0	At5g55560	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	Ta.18914.1.A1_a_at	CD875211	-	-	2e-1	At2g18915	LKP2 (LOV KELCH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	TaAffx.55278.1.S1_x_at	CA668780	Plasma membrane H+-ATPase	-	4e+0	At5g27238	-	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.96	Ta.10947.1.S1_at	CK152049	-	-	3e+0	At4g08280	-	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.95	Ta.12682.1.A1_at	BQ170634	-	-	1e+0	At3g22210	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
12.2	99.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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