Co-expression analysis

Gene ID TaAffx.86386.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=5e-6)
Module size 7 genes
NF 0.01
%ile 2.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.10.67TaAffx.86386.1.S1_atCA609728--5e-6At3g23660transport protein, putativeO.I.H.G.S.X.
0.1415.80.82TaAffx.53323.1.S1_atCA693606--2e-1At3g16175thioesterase family proteinO.I.H.G.S.X.
0.078.60.87Ta.25810.1.A1_atCD374040--1e+0At5g10310unknown proteinO.I.H.G.S.X.
0.067.60.87TaAffx.72471.1.S1_atCA725188--1e+0At2g27940zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.045.80.85TaAffx.59511.2.S1_atCA682522--1e-3At1g66890-O.I.H.G.S.X.
0.012.40.87Ta.3074.2.S1_x_atCA646915--1e-3At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.
-0.70.78Ta.28757.2.S1_atBQ609665--1e+0At1g80940unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.595.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.495.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611255_s_at, orthologous to the query gene, TaAffx.86386.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81611255_s_atAt3g23660S-adenosyl-L-methionine decarboxylase-4e+0At2g25080ATGPX1 (GLUTATHIONE PEROXIDASE 1)O.I.H.G.S.X.
0.8093.61609904_atAt3g23660hypothetical protein LOC100267206-4e-78At5g61410RPEO.I.H.G.S.X.
0.5577.31614054_atAt3g23660--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.5375.21616230_x_atAt3g23660--2e+1At5g43510-O.I.H.G.S.X.
0.4464.11622826_x_atAt3g23660--9e+0At2g04845GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.4057.71609907_x_atAt3g23660--8e+0At5g50345-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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