Co-expression analysis

Gene ID TaAffx.86386.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=5e-6)
Module size 7 genes
NF 0.01
%ile 2.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.10.67TaAffx.86386.1.S1_atCA609728--5e-6At3g23660transport protein, putativeO.I.H.G.S.X.
0.1415.80.82TaAffx.53323.1.S1_atCA693606--2e-1At3g16175thioesterase family proteinO.I.H.G.S.X.
0.078.60.87Ta.25810.1.A1_atCD374040--1e+0At5g10310unknown proteinO.I.H.G.S.X.
0.067.60.87TaAffx.72471.1.S1_atCA725188--1e+0At2g27940zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.045.80.85TaAffx.59511.2.S1_atCA682522--1e-3At1g66890-O.I.H.G.S.X.
0.012.40.87Ta.3074.2.S1_x_atCA646915--1e-3At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.
-0.70.78Ta.28757.2.S1_atBQ609665--1e+0At1g80940unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.595.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.495.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os11g0433500, orthologous to the query gene, TaAffx.86386.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os11g0433500At3g23660-Protein transport protein Sec23A (SEC23-relatedprotein A)1e-9At4g14160transport protein, putativeO.I.H.G.S.X.
0.6787.2Os05g0461000At3g23660-Clathrin adaptor complex, small chain familyprotein5e-1At4g08520clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.5068.0Os07g0496000At3g23660-Nt-rab6 protein9e-68At2g44610RAB6AO.I.H.G.S.X.
0.4660.9Os11g0181100At3g23660-Nonaspanin (TM9SF) family protein2e-70At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.4458.1Os03g0783700At3g23660-Clathrin assembly small subunit protein AP19(Clathrin assembly protein AP19, small subunit)5e-19At2g17380AP19O.I.H.G.S.X.
0.2625.6Os05g0556100At3g23660-SDL5A1e-43At3g61760ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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