Co-expression analysis

Gene ID	TaAffx.86386.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g23660: transport protein, putative (HF=5e-6)
Module size	7 genes
NF	0.01
%ile	2.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.67	TaAffx.86386.1.S1_at	CA609728	-	-	5e-6	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.82	TaAffx.53323.1.S1_at	CA693606	-	-	2e-1	At3g16175	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.87	Ta.25810.1.A1_at	CD374040	-	-	1e+0	At5g10310	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.87	TaAffx.72471.1.S1_at	CA725188	-	-	1e+0	At2g27940	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.85	TaAffx.59511.2.S1_at	CA682522	-	-	1e-3	At1g66890	-	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.87	Ta.3074.2.S1_x_at	CA646915	-	-	1e-3	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
-	0.7	0.78	Ta.28757.2.S1_at	BQ609665	-	-	1e+0	At1g80940	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the soybean gene, Gma.17594.3.S1_at, orthologous to the query gene, TaAffx.86386.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	Gma.17594.3.S1_at	At3g23660	-	-	2e-12	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.93080.1.S1_s_at	At3g23660	-	-	2e-8	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.80549.1.S1_at	At3g23660	-	-	4e-41	At5g16300	-	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.92307.1.S1_s_at	At3g23660	-	-	4e-9	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10632.1.S1_a_at	At3g23660	-	-	5e-6	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.70227.1.S1_at	At3g23660	-	-	7e+0	Atmg00610	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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